Faculty Scholarship
Showing 241 - 250 of 734 Items
Multi-colony calibrations of coral Ba/Ca with a contemporaneous in situ seawater barium record
Date: 2016-04-15
Creator: Michèle LaVigne, Andréa G. Grottoli, James E. Palardy, Robert M. Sherrell
Access: Open access
- The coral skeleton barium to calcium ratio (Ba/Ca ), a proxy for seawater barium concentrations (Ba ), has been interpreted as a tracer of upwelling based on the characteristic "nutrient like" depth profile of Ba . However, in some tropical regions, such as the Gulf of Panamá, substantial influence of terrestrial runoff inputs and differences between the vertical distribution of Ba and that of the major nutrients (nitrate and phosphate) in the upper water column can complicate the interpretation of Ba/Ca as an upwelled nutrient proxy. In the Gulf of Panamá, contemporaneous Ba/Ca records from multiple colonies of Porites lobata, Pavona gigantea, and Pavona clavus corals record a nearly twofold change in surface water Ba as a 20-70% increase in skeletal Ba/Ca with excellent correlation among Ba/Ca records from co-located colonies (r = 0.86-0.99). These results provide, for the first time, an absolute calibration of the coral Ba proxy with a contemporaneous Ba record. Compiling the Ba/Ca records from three co-located colonies of each species into taxon-specific composite regressions reveals strong statistically significant correlations with the Ba time-series record (p < 0.001). Differences among taxa in regression slope, y-intercept, and average distribution coefficient, as well as a demonstration of the application of the P. clavus calibration to a previously published Ba/Ca record, emphasize the necessity of using taxon-specific calibrations to reconstruct changes in Ba with accuracy. These results support the application of Ba/Ca to reconstruct past changes in absolute Ba concentrations, adding an important tool to the collection of geochemical proxies for reconstructing surface ocean biogeochemical processes in the past. coral SW SW SW coral coral SW SW coral SW coral SW coral SW
Associations Between Mode of Birth and Neuropsychological Development in Children Aged 4 Years: Results from a Birth Cohort Study
Date: 2021-12-01
Creator: Lea Takács, Samuel P. Putnam, Catherine Monk, Hannah G. Dahlen, Charlene, Thornton, František Bartoš, Anastasia Topalidou, Lilian L. Peters
Access: Open access
- The aim of this prospective longitudinal study was to examine the association between Cesarean section (CS) and child development and behavior. The sample consisted of 256 children who were born at term without serious perinatal pathologies. Their development and behavior was assessed at the age of four using Ages and Stages Questionnaire (ASQ-3), Children’s Behavior Questionnaire and Strength and Difficulties Questionnaire. Multivariate linear regression analyses were conducted to assess the association between CS and child outcomes. CS was associated with better scores in the Problem Solving domain of the ASQ in the whole sample. After stratifying by child sex, the positive association between CS and the Problem Solving domain was significant in boys, while no association was found in girls. Girls were rated less optimally in the Gross Motor domain of the ASQ when born via CS. Mode of birth was not associated with behavioral outcomes.
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
Date: 2009-06-04
Creator: Geraldine Butler, Matthew D. Rasmussen, Michael F. Lin, Manuel A.S. Santos, Sharadha, Sakthikumar, Carol A. Munro, Esther Rheinbay, Manfred Grabherr, Anja Forche, Jennifer L. Reedy, Ino Agrafioti, Martha B. Arnaud, Steven Bates, Alistair J.P. Brown, Sascha Brunke, Maria C. Costanzo, David A. Fitzpatrick, Piet W.J. De Groot, David Harris, Lois L. Hoyer, Bernhard Hube, Frans M. Klis, Chinnappa Kodira, Nicola Lennard, Mary E. Logue, Ronny Martin, Aaron M. Neiman, Elissavet Nikolaou, Michael A. Quail, Janet Quinn, Maria C. Santos
Access: Open access
- Candida species are the most common cause of opportunistic fungal infection worldwide. Here we report the genome sequences of six Candida species and compare these and related pathogens and non-pathogens. There are significant expansions of cell wall, secreted and transporter gene families in pathogenic species, suggesting adaptations associated with virulence. Large genomic tracts are homozygous in three diploid species, possibly resulting from recent recombination events. Surprisingly, key components of the mating and meiosis pathways are missing from several species. These include major differences at the mating-type loci (MTL); Lodderomyces elongisporus lacks MTL, and components of the a1/α2 cell identity determinant were lost in other species, raising questions about how mating and cell types are controlled. Analysis of the CUG leucine-to-serine genetic-code change reveals that 99% of ancestral CUG codons were erased and new ones arose elsewhere. Lastly, we revise the Candida albicans gene catalogue, identifying many new genes. © 2009 Macmillan Publishers Limited. All rights reserved.
Social support buffers the effects of maternal prenatal stress on infants' unpredictability
Date: 2021-06-01
Creator: Lea Takács, Jiří Štipl, Maria Gartstein, Samuel P. Putnam, Catherine, Monk
Access: Open access
- Objective: Exposure to stress in pregnancy has been shown to affect fetal development with short- and long-term physiological and behavioral consequences for the offspring. Although social support is known to lower perceived stress, no prior study has investigated the buffering role of social support in the context of prenatal stress effects on infant temperament. The aim of this study was to examine interactive effects of prenatal stress and social support on several dimensions of infant temperament at 9 months postpartum. Study design: A total of 272 mothers completed the Perceived Stress Scale and the Perceived Social Support Scale in the 3rd trimester of pregnancy. Infant temperament was assessed by mothers at 9 months postpartum using the Infant Characteristics Questionnaire. Linear regression models were performed to assess the effects of perceived stress, social support, and their interaction on infant temperament. Results: Prenatal stress interacted with social support, such that prenatal stress increased infant unpredictability when social support was below -0.5 SD. Conclusions: Prenatal stress was found to be a risk factor for infant temperamental unpredictability when combined with low social support perceived by the mother during pregnancy. Support of others, not previously examined in this context, can reduce the impact of prenatal stress.
Consequences of a flattened morphology: effects of flow on feeding rates of the scleractinian coral Meandrina meandrites
Date: 1993-01-01
Creator: A. S. Johnson, K. P. Sebens
Access: Open access
- Per polyp feeding rate was independent of the horizontal planform area of colonies. At the lowest velocities, most particles were captured on the upstream edge or in the middle of colonies, but all positional bias in capture rate disappeared at higher velocities. Particle capture and increasing flow speed were negatively associated. There were small, but measurable, differences in mean tentacle length between corals feeding at different velocities. Velocity-dependent feeding rate at most velocities was thus related to changes in flow rather than to changes in feeding behavior. Experiments in which corals were turned upside down revealed that the increased capture rate for rightside-up corals feeding at low velocity could be almost entirely accounted for by gravitational deposition of particles on the corals' tentacles. The tentacles form a canopy within which water movement was slowed, possibly facilitating gravitational deposition of non-buoyant or sinking food particles. -from Authors
FMRI and EEG predictors of dynamic decision parameters during human reinforcement learning
Date: 2015-01-01
Creator: Michael J. Frank, Chris Gagne, Erika Nyhus, Sean Masters, Thomas V., Wiecki, James F. Cavanagh, David Badre
Access: Open access
- What are the neural dynamics of choice processes during reinforcement learning? Two largely separate literatures have examined dynamics of reinforcement learning (RL) as a function of experience but assuming a static choice process, or conversely, the dynamics of choice processes in decision making but based on static decision values. Here we show that human choice processes during RL are well described by a drift diffusion model (DDM) of decision making in which the learned trial-by-trial reward values are sequentially sampled, with a choice made when the value signal crosses a decision threshold. Moreover, simultaneous fMRI and EEG recordings revealed that this decision threshold is not fixed across trials but varies as a function of activity in the subthalamic nucleus (STN) and is further modulated by trial-by-trial measures of decision conflict and activity in the dorsomedial frontal cortex (pre-SMABOLDand mediofrontal theta in EEG). These findings provide converging multimodal evidence for a model in which decision threshold in reward-based tasks is adjusted as a function of communication from pre-SMA to STN when choices differ subtly in reward values, allowing more time to choose the statistically more rewarding option.
Computing word length in alternate presentations of thompson's group F
Date: 2009-12-01
Creator: Matthew Horak, Melanie Stein, Jennifer Taback
Access: Open access
- We introduce a new method for computing the word length of an element of Thompson's group F with respect to a "consecutive" generating set of the form Xn = {x0,x1, ⋯, xn}, which is a subset of the standard infinite generating set for F. We use this method to show that (F, Xn) is not almost convex, and has pockets of increasing, though bounded, depth dependent on n. © 2009 World Scientific Publishing Company.
Cone types and geodesic languages for lamplighter groups and Thompson's group F
Date: 2006-09-15
Creator: Sean Cleary, Murray Elder, Jennifer Taback
Access: Open access
- We study languages of geodesics in lamplighter groups and Thompson's group F. We show that the lamplighter groups Ln have infinitely many cone types, have no regular geodesic languages, and have 1-counter, context-free and counter geodesic languages with respect to certain generating sets. We show that the full language of geodesics with respect to one generating set for the lamplighter group is not counter but is context-free, while with respect to another generating set the full language of geodesics is counter and context-free. In Thompson's group F with respect to the standard finite generating set, we show there are infinitely many cone types and that there is no regular language of geodesics. We show that the existence of families of "seesaw" elements with respect to a given generating set in a finitely generated infinite group precludes a regular language of geodesics and guarantees infinitely many cone types with respect to that generating set. © 2005 Elsevier Inc. All rights reserved.
Chloroplasts of Arabidopsis thaliana homozygous for the ch-1 locus lack chlorophyll b, lack stable LHCPII and have stacked thylakoids
Date: 1991-07-01
Creator: David L. Murray, Bruce D. Kohorn
Access: Open access
On the nature of eγ and non-vanishing of derivatives of L-series at s=1/2
Date: 2014-04-30
Creator: M. Ram Murty, Naomi Tanabe
Access: Open access
- In 2011, M.R. Murty and V.K. Murty [10] proved that if L(s, χD) is the Dirichlet L-series attached a quadratic character χD, and L'(1, χD)=0, then eγ is transcendental. This paper investigates such phenomena in wider collections of L-functions, with a special emphasis on Artin L-functions. Instead of s=1, we consider s=1/2. More precisely, we prove thatexp (L'(1/2,χ)L(1/2,χ)-αγ) is transcendental with some rational number α. In particular, if we have L(1/2, χ)≠0 and L'(1/2, χ)=0 for some Artin L-series, we deduce the transcendence of eγ.