Faculty Scholarship
Showing 361 - 370 of 734 Items
Is variation in susceptibility to Phytophthora ramorum correlated with population genetic structure in coast live oak (Quercus agrifolia)?
Date: 2005-01-01
Creator: Richard S. Dodd, Daniel Hüberli, Vlad Douhovnikoff, Tamar Y. Harnik, Zara, Afzal-Rafii, Matteo Garbelotto
Access: Open access
- California coastal woodlands are suffering severe disease and mortality as a result of infection from Phytophthora ramorum. Quercus agrifolia is one of the major woodland species at risk. This study investigated within- and among-population variation in host susceptibility to inoculation with P. ramorum and compared this with population genetic structure using molecular markers. Susceptibility was assessed using a branch-cutting inoculation test. Trees were selected from seven natural populations in California. Amplified fragment length polymorphism molecular markers were analysed for all trees used in the trials. Lesion sizes varied quantitatively among individuals within populations, with up to an eightfold difference. There was little support for population differences in susceptibility. Molecular structure also showed a strong within-population, and weaker among-population, pattern of variation. Our data suggest that susceptibility of Q. agrifolia to P. ramorum is variable and is under the control of several gene loci. This variation exists within populations, so that less susceptible local genotypes may provide the gene pool for regeneration of woodlands where mortality is high. © New Phytologist (2004).
Sexual reproduction is more prevalent in continental landscapes in the expanding arctic shrub, Salix glauca
Date: 2019-12-01
Creator: David A. Watts, Vladimir Douhovnikoff, Eric Post
Access: Open access
- The recent expansion of arctic deciduous shrubs has been well documented across a range of habitats, but the phenomenon is not universal. Their spread is often associated with increases in temperature and other abiotic factors, while variation in habitat moisture and herbivory can mediate the location and rate of this rise in abundance. Much less is known about the mode of increase of arctic shrubs. For one such shrub, Salix glauca, we used microsatellite markers to assess the prevalence of clonal growth (i.e. vegetative spread) and sexual reproduction (i.e. recruitment from seed) at sites with maritime and continental climates and differing in the density of large herbivores. We sampled individuals in plots reflecting the spatial scale of expansion in locations where S. glauca recently increased in abundance. The 400 samples collected across the four sites comprised 310 genotypes. Though evidence of sexual recruitment was common across all sites, coastal sites contained both more and larger clonal genotypes. While we expected soil conditions would be influential, the factors that best predicted the likelihood of clonality, genet size and vascular plant cover, suggest the light environment is of primary importance. Furthermore, in spite of the large distances between sites, there was no suggestion of genetic differentiation into distinct populations. These results indicate that differences in climate and herbivory can influence not only where and how extensively deciduous shrubs spread, but how they are likely to do so. We suggest future research integrating how mode of increase is associated with the rate of spread will advance projections of change in arctic ecosystems.
Molecular characterization of putative neuropeptide, amine, diffusible gas and small molecule transmitter biosynthetic enzymes in the eyestalk ganglia of the American lobster, Homarus americanus
Date: 2018-12-01
Creator: Andrew E. Christie, Meredith E. Stanhope, Helen I. Gandler, Tess J. Lameyer, Micah G., Pascual, Devlin N. Shea, Andy Yu, Patsy S. Dickinson, J. Joe Hull
Access: Open access
- The American lobster, Homarus americanus, is a model for investigating the neuromodulatory control of physiology and behavior. Prior studies have shown that multiple classes of chemicals serve as locally released/circulating neuromodulators/neurotransmitters in this species. Interestingly, while many neuroactive compounds are known from Homarus, little work has focused on identifying/characterizing the enzymes responsible for their biosynthesis, despite the fact that these enzymes are key components for regulating neuromodulation/neurotransmission. Here, an eyestalk ganglia-specific transcriptome was mined for transcripts encoding enzymes involved in neuropeptide, amine, diffusible gas and small molecule transmitter biosynthesis. Using known Drosophila melanogaster proteins as templates, transcripts encoding putative Homarus homologs of peptide precursor processing (signal peptide peptidase, prohormone processing protease and carboxypeptidase) and immature peptide modifying (glutaminyl cyclase, tyrosylprotein sulfotransferase, protein disulfide isomerase, peptidylglycine-α-hydroxylating monooxygenase and peptidyl-α-hydroxyglycine-α-amidating lyase) enzymes were identified in the eyestalk assembly. Similarly, transcripts encoding full complements of the enzymes responsible for dopamine [tryptophan-phenylalanine hydroxylase (TPH), tyrosine hydroxylase and DOPA decarboxylase (DDC)], octopamine (TPH, tyrosine decarboxylase and tyramine β-hydroxylase), serotonin (TPH or tryptophan hydroxylase and DDC) and histamine (histidine decarboxylase) biosynthesis were identified from the eyestalk ganglia, as were those responsible for the generation of the gases nitric oxide (nitric oxide synthase) and carbon monoxide (heme oxygenase), and the small molecule transmitters acetylcholine (choline acetyltransferase), glutamate (glutaminase) and GABA (glutamic acid decarboxylase). The presence and identity of the transcriptome-derived transcripts were confirmed using RT-PCR. The data presented here provide a foundation for future gene-based studies of neuromodulatory control at the level of neurotransmitter/modulator biosynthesis in Homarus.
The pyloric neural circuit of the herbivorous crab Pugettia producta shows limited sensitivity to several neuromodulators that elicit robust effects in more opportunistically feeding decapods
Date: 2008-05-01
Creator: Patsy S. Dickinson, Elizabeth A. Stemmler, Andrew E. Christie
Access: Open access
- Modulation of neural circuits in the crustacean stomatogastric nervous system (STNS) allows flexibility in the movements of the foregut musculature. The extensive repertoire of such resulting motor patterns in dietary generalists is hypothesized to permit these animals to process varied foods. The foregut and STNS of Pugettia producta are similar to those of other decapods, but its diet is more uniform, consisting primarily of kelp. We investigated the distribution of highly conserved neuromodulators in the stomatogastric ganglion (STG) and neuroendocrine organs of Pugettia, and documented their effects on its pyloric rhythm. Using immunohistochemistry, we found that the distributions of Cancer borealis tachykinin-related peptide I (CabTRP I), crustacean cardioactive peptide (CCAP), proctolin, red pigment concentrating hormone (RPCH) and tyrosine hydroxylase (dopamine) were similar to those of other decapods. For all peptides except proctolin, the isoforms responsible for the immunoreactivity were confirmed by mass spectrometry to be the authentic peptides. Only two modulators had physiological effects on the pyloric circuit similar to those seen in other species. In non-rhythmic preparations, proctolin and the muscarinic acetylcholine agonist oxotremorine consistently initiated a full pyloric rhythm. Dopamine usually activated a pyloric rhythm, but this pattern was highly variable. In only about 25% of preparations, RPCH activated a pyloric rhythm similar to that seen in other species. CCAP and CabTRP I had no effect on the pyloric rhythm. Thus, whereas Pugettia possesses all the neuromodulators investigated, its pyloric rhythm, when compared with other decapods, appears less sensitive to many of them, perhaps because of its limited diet.
Animal-to-animal variability in the phasing of the crustacean cardiac motor pattern: An experimental and computational analysis
Date: 2013-01-01
Creator: Alex H. Williams, Molly A. Kwiatkowski, Adam L. Mortimer, Eve Marder, Mary Lou, Zeeman, Patsy S. Dickinson
Access: Open access
- The cardiac ganglion (CG) of Homarus americanus is a central pattern generator that consists of two oscillatory groups of neurons: "small cells" (SCs) and "large cells" (LCs). We have shown that SCs and LCs begin their bursts nearly simultaneously but end their bursts at variable phases. This variability contrasts with many other central pattern generator systems in which phase is well maintained. To determine both the consequences of this variability and how CG phasing is controlled, we modeled the CG as a pair of Morris-Lecar oscillators coupled by electrical and excitatory synapses and constructed a database of 15,000 simulated networks using random parameter sets. These simulations, like our experimental results, displayed variable phase relationships, with the bursts beginning together but ending at variable phases. The model suggests that the variable phasing of the pattern has important implications for the functional role of the excitatory synapses. In networks in which the two oscillators had similar duty cycles, the excitatory coupling functioned to increase cycle frequency. In networks with disparate duty cycles, it functioned to decrease network frequency. Overall, we suggest that the phasing of the CG may vary without compromising appropriate motor output and that this variability may critically determine how the network behaves in response to manipulations. © 2013 the American Physiological Society.
Mass spectrometric identification of pEGFYSQRYamide: A crustacean peptide hormone possessing a vertebrate neuropeptide Y (NPY)-like carboxy-terminus
Date: 2007-05-15
Creator: Elizabeth A. Stemmler, Emily A. Bruns, Noah P. Gardner, Patsy S. Dickinson, Andrew E., Christie
Access: Open access
- In invertebrates, peptides possessing the carboxy (C)-terminal motif -RXRFamide have been proposed as the homologs of vertebrate neuropeptide Y (NPY). Using matrix assisted laser desorption/ionization mass spectrometry, in combination with sustained off-resonance irradiation collision-induced dissociation and chemical and enzymatic reactions, we have identified the peptide pEGFYSQRYamide from the neuroendocrine pericardial organ (PO) of the crab Pugettia producta. This peptide is likely the same as that previously reported, but misidentified, as PAFYSQRYamide in several earlier reports (e.g. [Li, L., Kelley, W.P., Billimoria, C.P., Christie, A.E., Pulver, S.R., Sweedler, J.V., Marder, E. 2003. Mass spectrometric investigation of the neuropeptide complement and release in the pericardial organs of the crab, Cancer borealis. J. Neurochem. 87, 642-656; Fu, Q., Kutz, K.K., Schmidt, J.J., Hsu, Y.W., Messinger, D.I., Cain, S.D., de la Iglesia, H.O., Christie, A.E., Li, L. 2005. Hormone complement of the Cancer productus sinus gland and pericardial organ: an anatomical and mass spectrometric investigation. J. Comp. Neurol. 493, 607-626.]). The -QRYamide motif contained in pEGFYSQRYamide is identical to that present in many vertebrate members of the NPY superfamily. Mass spectrometric analysis conducted on the POs of several other decapods showed that pEGFYSQRYamide is present in three other brachyurans (Cancer borealis, Cancer irroratus and Cancer productus) as well as in one species from another decapod infraorder (Lithodes maja, an anomuran). Thus, our findings show that at least some invertebrates possess NPY-like peptides in addition to those exhibiting an -RXRFamide C-terminus, and raise the question as to whether the invertebrate -QRYamides are functionally and/or evolutionarily related to the NPY superfamily. © 2007 Elsevier Inc. All rights reserved.
Narrative painting and visual gossip at the early-twentieth-century royal academy
Date: 2009-06-01
Creator: Pamela Fletcher
Access: Open access
- Narrative paintings of modern life were immensely popular at the Royal Academy from the 1850s well into the early twentieth century. Perfectly suited to the Academy's culture of conversation, the pictures invited viewers to respond to the scenes as if they were real life situations, and gossip about the depicted characters as if they were real people. While such responses were routinely derided by critics as evidence of the public's lack of aesthetic sophistication, they offer tantalizing glimpses of the pictures' social lives. This article argues that taking gossip seriously as a mode of engagement with art both amplifies our understanding of the meanings, functions, and pleasures of narrative painting, and suggests specific connections between exhibition culture and the meanings of pictures. Using the richly documented reception of the 'problem pictures' of the 1910s and 1920s as the primary evidence, this article establishes a taxonomy of gossipy modes of engagement with narrative painting, and argues that gossiping about pictures allowed for the performance of individual identity, the creation of social and artistic groups, and connected public and private understandings of the world.
Trumpet slices of the Schwarzschild-Tangherlini spacetime
Date: 2010-12-01
Creator: Kenneth A. Dennison, John P. Wendell, Thomas W. Baumgarte, J. David Brown
Access: Open access
- We study families of time-independent maximal and 1+log foliations of the Schwarzschild-Tangherlini spacetime, the spherically symmetric vacuum black hole solution in D spacetime dimensions, for D≥4. We identify special members of these families for which the spatial slices display a trumpet geometry. Using a generalization of the 1+log slicing condition that is parameterized by a constant n we recover the results of Nakao, Abe, Yoshino, and Shibata in the limit of maximal slicing. We also construct a numerical code that evolves the Baumgarte-Shapiro-Shibata-Nakamura equations for D=5 in spherical symmetry using moving-puncture coordinates and demonstrate that these simulations settle down to the trumpet solutions. © 2010 The American Physical Society.
Acoustic measurements of the stripe and the bubble quantum Hall phase
Date: 2015-04-01
Creator: M. E. Msall, W. Dietsche
Access: Open access
- We launch surface acousticwaves (SAW) along both the and the directions of aHall bar and measure the anisotropic conductivity in a high purity GaAs two-dimensional electron system in the quantum Hall regime of the stripe and the bubble phases. In the anisotropic stripe phase,SAW propagating along the 'easy' direction sense a compressible behavior (finite resistance)which is seen in standard transportmeasurement only if current flows along the 'hard' direction. In the isotropic bubble phase, the SAW data show compressible behavior in both directions, in marked contrast to the incompressible quantum Hall behavior seen in transport measurements. These results challenge models that assume that both the stripe and the bubble phase consist of incompressible domains and raise important questions about the role of domain boundaries in SAW propagation.
Analytical tendex and vortex fields for perturbative black hole initial data
Date: 2012-10-26
Creator: Kenneth A. Dennison, Thomas W. Baumgarte
Access: Open access
- Tendex and vortex fields, defined by the eigenvectors and eigenvalues of the electric and magnetic parts of the Weyl curvature tensor, form the basis of a recently developed approach to visualizing spacetime curvature. In particular, this method has been proposed as a tool for interpreting results from numerical binary black hole simulations, providing a deeper insight into the physical processes governing the merger of black holes and the emission of gravitational radiation. Here we apply this approach to approximate but analytical initial data for both single boosted and binary black holes. These perturbative data become exact in the limit of small boost or large binary separation. We hope that these calculations will provide additional insight into the properties of tendex and vortex fields and will form a useful test for future numerical calculations. © 2012 American Physical Society.