Faculty Scholarship
Showing 551 - 560 of 733 Items
Resistance to dislodgement: habitat and size-specific differences in morphology and tenacity in an intertidal snail
Date: 1993-01-01
Creator: G. C. Trussell, A. S. Johnson, S. G. Rudolph, E. S. Gilfillan
Access: Open access
- The authors quantified 1) shell size (defined as the maximum projected surface area, MPSA); 2) shell shape; 3) foot area; 4) maximum force to dislodge a snail in shear; and 5) tenacity (force per foot area required to dislodge) of the herbivorous Littorina obtusata. Wave-exposed snails were smaller (lower average MPSA), and were shorter and had larger foot area and greater dislodgement force than did protected snails of similar MPSA. The greater dislodgement force at the exposed site was due to larger foot area, not to greater tenacity. -from Authors
Origami-based impact mitigation via rarefaction solitary wave creation
Date: 2019-01-01
Creator: Hiromi Yasuda, Yasuhiro Miyazawa, Efstathios G. Charalampidis, Christopher Chong, Panayotis G., Kevrekidis, Jinkyu Yang
Access: Open access
- The principles underlying the art of origami paper folding can be applied to design sophisticated metamaterials with unique mechanical properties. By exploiting the flat crease patterns that determine the dynamic folding and unfolding motion of origami, we are able to design an origami-based metamaterial that can form rarefaction solitary waves. Our analytical, numerical, and experimental results demonstrate that this rarefaction solitary wave overtakes initial compressive strain waves, thereby causing the latter part of the origami structure to feel tension first instead of compression under impact. This counterintuitive dynamic mechanism can be used to create a highly efficient-yet reusable-impact mitigating system without relying on material damping, plasticity, or fracture.
Inbreeding shapes the evolution of marine invertebrates
Date: 2020-05-01
Creator: Kevin C. Olsen, Will H. Ryan, Alice A. Winn, Ellen T. Kosman, Jose A., Moscoso, Stacy A. Krueger-Hadfield, Scott C. Burgess, David B. Carlon, Richard K. Grosberg, Susan Kalisz, Don R. Levitan
Access: Open access
- Inbreeding is a potent evolutionary force shaping the distribution of genetic variation within and among populations of plants and animals. Yet, our understanding of the forces shaping the expression and evolution of nonrandom mating in general, and inbreeding in particular, remains remarkably incomplete. Most research on plant mating systems focuses on self-fertilization and its consequences for automatic selection, inbreeding depression, purging, and reproductive assurance, whereas studies of animal mating systems have often assumed that inbreeding is rare, and that natural selection favors traits that promote outbreeding. Given that many sessile and sedentary marine invertebrates and marine macroalgae share key life history features with seed plants (e.g., low mobility, modular construction, and the release of gametes into the environment), their mating systems may be similar. Here, we show that published estimates of inbreeding coefficients (FIS) for sessile and sedentary marine organisms are similar and at least as high as noted in terrestrial seed plants. We also found that variation in FIS within invertebrates is related to the potential to self-fertilize, disperse, and choose mates. The similarity of FIS for these organismal groups suggests that inbreeding could play a larger role in the evolution of sessile and sedentary marine organisms than is currently recognized. Specifically, associations between traits of marine invertebrates and FIS suggest that inbreeding could drive evolutionary transitions between hermaphroditism and separate sexes, direct development and multiphasic life cycles, and external and internal fertilization.
Increasing forest loss worldwide from invasive pests requires new trade regulations
Date: 2014-10-01
Creator: Bitty A. Roy, Helen M. Alexander, Jennifer Davidson, Faith T. Campbell, Jeremy J., Burdon, Richard Sniezko, Clive Brasier
Access: Open access
- Loss of forests due to non-native invasive pests (including insects, nematodes, and pathogens) is a global phenomenon with profound population, community, ecosystem, and economic impacts. We review the magnitude of pest-associated forest loss worldwide and discuss the major ecological and evolutionary causes and consequences of these invasions. After compiling and analyzing a dataset of pest invasions from 21 countries, we show that the number of forest pest invasions recorded for a given country has a significant positive relationship with trade (as indicated by gross domestic product) and is not associated with the amount of forested land within that country. We recommend revisions to existing international protocols for preventing pest entry and proliferation, including prohibiting shipments of non-essential plants and plant products unless quarantined. Because invasions often originate from taxa that are scientifically described only after their introduction, current phytosanitary regulations - which target specific, already named organisms - Are ineffective.
A simple polymerase chain reaction-based method for the construction of recombinase-mediated cassette exchange donor vectors
Date: 2008-11-01
Creator: Jack R. Bateman, C. Ting Wu
Access: Open access
- Here we describe a simple method for generating donor vectors suitable for targeted transgenesis via recombinase-mediated cassette exchange (RMCE) using the ΦC31 integrase. This PCR-based strategy employs small attB "tails" on the primers used to amplify a sequence of interest, permitting the rapid creation of transgenes for in vivo analysis. Copyright © 2008 by the Genetics Society of America.
FMRF-NH2-related neuropeptides in Biomphalaria spp., intermediate hosts for schistosomiasis: Precursor organization and immunohistochemical localization
Date: 2021-09-01
Creator: Solymar Rolón-Martínez, Mohamed R. Habib, Tamer A. Mansour, Manuel Díaz-Ríos, Joshua J.C., Rosenthal, Xiao Nong Zhou, Roger P. Croll, Mark W. Miller
Access: Open access
- Freshwater snails of the genus Biomphalaria serve as intermediate hosts for the digenetic trematode Schistosoma mansoni, the etiological agent for the most widespread form of intestinal schistosomiasis. As neuropeptide signaling in host snails can be altered by trematode infection, a neural transcriptomics approach was undertaken to identify peptide precursors in Biomphalaria glabrata, the major intermediate host for S. mansoni in the Western Hemisphere. Three transcripts that encode peptides belonging to the FMRF-NH2-related peptide (FaRP) family were identified in B. glabrata. One transcript encoded a precursor polypeptide (Bgl-FaRP1; 292 amino acids) that included eight copies of the tetrapeptide FMRF-NH2 and single copies of FIRF-NH2, FLRF-NH2, and pQFYRI-NH2. The second transcript encoded a precursor (Bgl-FaRP2; 347 amino acids) that comprised 14 copies of the heptapeptide GDPFLRF-NH2 and 1 copy of SKPYMRF-NH2. The precursor encoded by the third transcript (Bgl-FaRP3; 287 amino acids) recapitulated Bgl-FaRP2 but lacked the full SKPYMRF-NH2 peptide. The three precursors shared a common signal peptide, suggesting a genomic organization described previously in gastropods. Immunohistochemical studies were performed on the nervous systems of B. glabrata and B. alexandrina, a major intermediate host for S. mansoni in Egypt. FMRF-NH2-like immunoreactive (FMRF-NH2-li) neurons were located in regions of the central nervous system associated with reproduction, feeding, and cardiorespiration. Antisera raised against non-FMRF-NH2 peptides present in the tetrapeptide and heptapeptide precursors labeled independent subsets of the FMRF-NH2-li neurons. This study supports the participation of FMRF-NH2-related neuropeptides in the regulation of vital physiological and behavioral systems that are altered by parasitism in Biomphalaria.
Trumpet slices of the Schwarzschild-Tangherlini spacetime
Date: 2010-12-01
Creator: Kenneth A. Dennison, John P. Wendell, Thomas W. Baumgarte, J. David Brown
Access: Open access
- We study families of time-independent maximal and 1+log foliations of the Schwarzschild-Tangherlini spacetime, the spherically symmetric vacuum black hole solution in D spacetime dimensions, for D≥4. We identify special members of these families for which the spatial slices display a trumpet geometry. Using a generalization of the 1+log slicing condition that is parameterized by a constant n we recover the results of Nakao, Abe, Yoshino, and Shibata in the limit of maximal slicing. We also construct a numerical code that evolves the Baumgarte-Shapiro-Shibata-Nakamura equations for D=5 in spherical symmetry using moving-puncture coordinates and demonstrate that these simulations settle down to the trumpet solutions. © 2010 The American Physical Society.
Molecules and fossils reveal punctuated diversification in Caribbean "faviid" corals
Date: 2012-08-27
Creator: Sonja A. Schwartz, Ann F. Budd, David B. Carlon
Access: Open access
- Background: Even with well-known sampling biases, the fossil record is key to understanding macro-evolutionary patterns. During the Miocene to Pleistocene in the Caribbean Sea, the fossil record of scleractinian corals shows a remarkable period of rapid diversification followed by massive extinction. Here we combine a time-calibrated molecular phylogeny based on three nuclear introns with an updated fossil stratigraphy to examine patterns of radiation and extinction in Caribbean corals within the traditional family Faviidae. Results: Concatenated phylogenetic analysis showed most species of Caribbean faviids were monophyletic, with the exception of two Manicina species. The time-calibrated tree revealed the stem group originated around the closure of the Tethys Sea (17.0 Ma), while the genus Manicina diversified during the Late Miocene (8.20 Ma), when increased sedimentation and productivity may have favored free-living, heterotrophic species. Reef and shallow water specialists, represented by Diploria and Favia, originate at the beginning of the Pliocene (5 - 6 Ma) as the Isthmus of Panama shoaled and regional productivity declined. Conclusions: Later origination of the stem group than predicted from the fossil record corroborates the hypothesis of morphological convergence in Diploria and Favia genera. Our data support the rapid evolution of morphological and life-history traits among faviid corals that can be linked to Mio-Pliocene environmental changes. © 2012 Schwartz et al.; licensee BioMed Central Ltd.
Non-amidated and amidated members of the C-type allatostatin (AST-C) family are differentially distributed in the stomatogastric nervous system of the American lobster, Homarus americanus
Date: 2018-03-01
Creator: Andrew E. Christie, Alexandra Miller, Rebecca Fernandez, Evyn S. Dickinson, Audrey, Jordan, Jessica Kohn, Mina C. Youn, Patsy S. Dickinson
Access: Open access
- The crustacean stomatogastric nervous system (STNS) is a well-known model for investigating neuropeptidergic control of rhythmic behavior. Among the peptides known to modulate the STNS are the C-type allatostatins (AST-Cs). In the lobster, Homarus americanus, three AST-Cs are known. Two of these, pQIRYHQCYFNPISCF (AST-C I) and GNGDGRLYWRCYFNAVSCF (AST-C III), have non-amidated C-termini, while the third, SYWKQCAFNAVSCFamide (AST-C II), is C-terminally amidated. Here, antibodies were generated against one of the non-amidated peptides (AST-C I) and against the amidated isoform (AST-C II). Specificity tests show that the AST-C I antibody cross-reacts with both AST-C I and AST-C III, but not AST-C II; the AST-C II antibody does not cross-react with either non-amidated peptide. Wholemount immunohistochemistry shows that both subclasses (non-amidated and amidated) of AST-C are distributed throughout the lobster STNS. Specifically, the antibody that cross-reacts with the two non-amidated peptides labels neuropil in the CoGs and the stomatogastric ganglion (STG), axons in the superior esophageal (son) and stomatogastric (stn) nerves, and ~ 14 somata in each commissural ganglion (CoG). The AST-C II-specific antibody labels neuropil in the CoGs, STG and at the junction of the sons and stn, axons in the sons and stn, ~ 42 somata in each CoG, and two somata in the STG. Double immunolabeling shows that, except for one soma in each CoG, the non-amidated and amidated peptides are present in distinct sets of neuronal profiles. The differential distributions of the two AST-C subclasses suggest that the two peptide groups are likely to serve different modulatory roles in the lobster STNS.
Two measurements of B0B»0 mixing
Date: 1993-01-01
Creator: J. Bartelt, S. E. Csorna, Z. Egyed, V. Jain, P., Sheldon, D. S. Akerib, B. Barish, M. Chadha, S. Chan, D. F. Cowen, G. Eigen, J. S. Miller, C. O'Grady, J. Urheim, A. J. Weinstein, D. Acosta, M. Athanas, G. Masek, B. Ong, H. Paar, M. Sivertz, A. Bean, J. Gronberg, R. Kutschke, S. Menary, R. J. Morrison, S. Nakanishi, H. N. Nelson, T. K. Nelson, J. D. Richman, A. Ryd
Access: Open access
- We have measured the B0B»0 mixing probability, d, using a sample of 965 000 BB» pairs from (4S) decays. Counting dilepton events, we find d=0.1570.0160.018-0.021+0.028. Using tagged B0 events, we find d=0.1490.0230.0190.010. The first (second) error is statistical (systematic). The third error reflects a 15% uncertainty in the assumption, made in both cases, that charged and neutral B pairs contribute equally to dilepton events. We also obtain a limit on the CP impurity in the Bd0 system, Re(B0)<0.045 at 90% C.L. © 1993 The American Physical Society.