Showing 501 - 550 of 5840 Items
An alternative almost sure construction of Gaussian stochastic processes in the L2([0,1]) space
Date: 2019-05-01
Creator: Kevin Chen
Access: Open access
Sutural loosening and skeletal flexibility during growth: Determination of drop-like shapes in sea urchins
Date: 2002-02-07
Creator: Amy S. Johnson, Olaf Ellers, Jim Lemire, Melissa Minor, Holly A., Leddy
Access: Open access
- The shape of sea urchins may be determined mechanically by patterns of force analogous to those that determine the shape of a water droplet. This mechanical analogy implies skeletal flexibility at the time of growth. Although comprised of many rigid calcite plates, sutural collagenous ligaments could confer such flexibility if the sutures between plates loosened and acted as joints at the time of growth. We present experimental evidence of such flexibility associated with weight gain and growth. Over 13-, 4-, and 2-week periods, fed urchins (Strongylocentrotus droebachiensis) gained weight and developed looser sutures than unfed urchins that maintained or lost weight. Further, skeletons of fed urchins force-relaxed more than did those of unfed urchins and urchins with loose sutures force-relaxed more than those with tight sutures. Urchins (Strongylocentrotus franciscanus) fed for two and a half weeks, gained weight, also had looser skeletons and deposited calcite at sutural margins, whereas unfed ones did not. In field populations of S. droebachiensis the percentage having loose sutures varied with urchin diameter and reflected their size-specific growth rate. The association between feeding, weight gain, calcite deposition, force relaxation and sutural looseness supports the hypothesis that urchins deform flexibly while growing, thus determining their drop-like shapes.
Medieval Sculptor
Date: 1971-01-01
Creator: Brooks W. Stoddard
Access: Open access
- Exhibition catalogue, Bowdoin College Museum of Art.
Using the very short form of the children’s behavior questionnaire for spanish-speaking populations in low-and middle-income countries: A psychometric analysis of dichotomized variables
Date: 2021-02-01
Creator: Elsa Lucia Escalante-Barrios, Sonia Mariel Suarez-Enciso, Samuel P. Putnam, Helen Raikes, Sergi, Fàbregues
Access: Open access
- While the psychometric properties of the Spanish version of the Very Short Form of the Children’s Behavior Questionnaire (CBQ-VSF) have been assessed in the US and Europe in samples composed of middle-and high-income parents with high levels of education, no studies have tested the instrument in low-income Spanish-speaking populations living in low-and middleincome countries. To fill this gap, our cross-sectional study assessed the psychometric properties of the Spanish version of the CBQ-VSF version in a sample of 315 low-income and low-educated parents with preschool children living in the Caribbean Region of Colombia. While our findings revealed problems that were similar to those identified in previous assessments of the CBQ-VSF Spanish version, they also showed unique problems related to the sociodemographic characteristics of our sample, containing many individuals with a low income and low educational level. Most of the participants gave extreme responses, resulting in a notable kurtosis and skewness of the data. This article describes how we addressed these problems by dichotomizing the variables into binary categories. Additionally, it demonstrates that merely translating the CBQ-VSF is insufficient to be able to capture many of the underlying latent constructs associated with low-income and low-educated Latino/Hispanic populations.
Learning the futility of the thought suppression enterprise in normal experience and in obsessive compulsive disorder
Date: 2010-01-01
Creator: Sadia Najmi, Hannah Reese, Sabine Wilhelm, Jeanne Fama, Celeste, Beck, Daniel M. Wegner
Access: Open access
- Background: The belief that we can control our thoughts is not inevitably adaptive, particularly when it fuels mental control activities that have ironic unintended consequences. The conviction that the mind can and should be controlled can prompt people to suppress unwanted thoughts, and so can set the stage for the intrusive return of those very thoughts. An important question is whether or not these beliefs about the control of thoughts can be reduced experimentally. One possibility is that behavioral experiments aimed at revealing the ironic return of suppressed thoughts might create a lesson that could reduce unrealistic beliefs about the control of thoughts. Aims: The present research assessed the influence of the thought suppression demonstration on beliefs about the control of thoughts in a non-clinical sample, and among individuals with obsessive-compulsive disorder (OCD). Method: In Study 1, we assessed the effect of the thought suppression demonstration on beliefs about the control of thoughts among low and high obsessive individuals in the non-clinical population (N = 62). In Study 2, we conducted a similar study with individuals with OCD (N = 29). Results: Results suggest that high obsessive individuals in the non-clinical population are able to learn the futility of suppression through the thought suppression demonstration and to alter their faulty beliefs about the control of thoughts; however, for individuals with OCD, the demonstration may be insufficient for altering underlying beliefs. Conclusions: For individuals with OCD, the connection between suppressing a neutral thought in the suppression demonstration and suppressing a personally relevant obsession may need to be stated explicitly in order to affect their obsessive beliefs. © British Association for Behavioural and Cognitive Psychotherapies 2009.
Individual differences in EEG correlates of recognition memory due to DAT polymorphisms
Date: 2017-12-01
Creator: Paolo Medrano, Erika Nyhus, Andrew Smolen, Tim Curran, Robert S., Ross
Access: Open access
- Introduction: Although previous research suggests that genetic variation in dopaminergic genes may affect recognition memory, the role dopamine transporter expression may have on the behavioral and EEG correlates of recognition memory has not been well established. Objectives: The study aims to reveal how individual differences in dopaminergic functioning due to genetic variations in the dopamine transporter gene influences behavioral and EEG correlates of recognition memory. Methods: Fifty-eight participants performed an item recognition task. Participants were asked to retrieve 200 previously presented words while brain activity was recorded with EEG. Regions of interest were established in scalp locations associated with recognition memory. Mean ERP amplitudes and event-related spectral perturbations when correctly remembering old items (hits) and recognizing new items (correct rejections) were compared as a function of dopamine transporter group. Results: Participants in the dopamine transporter group that codes for increased dopamine transporter expression (10/10 homozygotes) display slower reaction times compared to participants in the dopamine transporter group associated with the expression of fewer dopamine transporters (9R-carriers). 10/10 homozygotes further displayed differences in ERP and oscillatory activity compared to 9R-carriers. 10/10 homozygotes fail to display the left parietal old/new effect, an ERP signature of recognition memory associated with the amount of information retrieved. 10/10 homozygotes also displayed greater decreases of alpha and beta oscillatory activity during item memory retrieval compared to 9R-carriers. Conclusion: Compared to 9R-carriers, 10/10 homozygotes display slower hit and correct rejection reaction times, an absence of the left parietal old/new effect, and greater decreases in alpha and beta oscillatory activity during recognition memory. These results suggest that dopamine transporter polymorphisms influence recognition memory.
Incorporating an ERP project into undergraduate instruction
Date: 2016-01-01
Creator: Erika Nyhus, Nancy Curtis
Access: Open access
- Electroencephalogram (EEG) is a relatively non-invasive, simple technique, and recent advances in open source analysis tools make it feasible to implement EEG as a component in undergraduate neuroscience curriculum. We have successfully led students to design novel experiments, record EEG data, and analyze event-related potentials (ERPs) during a one-semester laboratory course for undergraduates in cognitive neuroscience. First, students learned how to set up an EEG recording and completed an analysis tutorial. Students then learned how to set up a novel EEG experiment; briefly, they formed groups of four and designed an EEG experiment on a topic of their choice. Over the course of two weeks students collected behavioral and EEG data. Each group then analyzed their behavioral and ERP data and presented their results both as a presentation and as a final paper. Upon completion of the group project students reported a deeper understanding of cognitive neuroscience methods and a greater appreciation for the strengths and weaknesses of the EEG technique. Although recent advances in open source software made this project possible, it also required access to EEG recording equipment and proprietary software. Future efforts should be directed at making publicly available datasets to learn ERP analysis techniques and making publicly available EEG recording and analysis software to increase the accessibility of hands-on research experience in undergraduate cognitive neuroscience laboratory courses. Copyright
Correction of profiles of in-situ chlorophyll fluorometry for the contribution of fluorescence originating from non-algal matter
Date: 2017-01-01
Creator: Xiaogang Xing, Hervé Claustre, Emmanuel Boss, Collin Roesler, Emanuele, Organelli, Antoine Poteau, Marie Barbieux, Fabrizio D’Ortenzio
Access: Open access
- In situ chlorophyll fluorometers have been widely employed for more than half a century, and to date, it still remains the most used instrument to estimate chlorophyll-a concentration in the field, especially for measurements onboard autonomous observation platforms, e.g., Bio-Argo floats and gliders. However, in deep waters (> 300 m) of some specific regions, e.g., subtropical gyres and the Black Sea, the chlorophyll fluorescence profiles frequently reveal "deep sea red fluorescence" features. In line with previous studies and through the analysis of a large data set (cruise transect in the South East Pacific and data acquired by 82 Bio- Argo floats), we show that the fluorescence signal measured by a humic-like DOM fluorometer is highly correlated to the "deep sea red fluorescence." Both fluorescence signals are indeed linearly related in deep waters. To remove the contribution of non-algal organic matter from chlorophyll fluorescence profiles, we introduce a new correction. Rather that removing a constant value (generally the deepest chlorophyll a fluorescence value from the profile, i.e., so-called "deep-offset correction"), we propose a correction method which relies on DOM fluorometry and on its variation with depth. This new method is validated with chlorophyll concentration extracted from water samples and further applied on the Bio-Argo float data set. More generally, we discuss the potential of the proposed method to become a standard and routine procedure in quality-control and correction of chlorophyll a fluorescence originating from Bio-Argo network.
“Unmotivated bias” and partisan hostility: Empirical evidence
Date: 2019-04-01
Creator: Daniel F. Stone
Access: Open access
- Extreme partisan animosity has been on the rise in the US and is prevalent around the world. This hostility is typically attributed to social group identity, motivated reasoning, or a combination thereof. In this paper, I empirically examine a novel contributing factor: the “unmotivated” cognitive bias of overprecision (overconfidence in precision of beliefs). Overprecision could cause partisan hostility indirectly via inflated confidence in one's own ideology, partisan identity, or perceptions of social distance between the parties. Overprecision could also cause this hostility directly by causing excessively strong inferences from observed information that is either skewed against the out-party or simply misunderstood. Using a nationally representative sample, I find consistent support for direct effects of overprecision and mixed support for indirect effects. The point estimates imply a one standard deviation increase in a respondent's overprecision predicts as much as a 0.71 standard deviation decline in relative out-party favorability.
Rapid evolution of a coadapted gene complex: Evidence from the segregation Distorter (SD) system of meiotic drive in Drosophila melanogaster
Date: 1996-09-11
Creator: Michael F. Palopoli, Chung I. Wu
Access: Open access
- Segregation Distorter (SD) is a system of meiotic drive found in natural populations of Drosophila melanogaster. Males heterozygous for an SD second chromosome and a normal homologue (SD+) produce predominantly SD- bearing sperm. The coadapted gene complex responsible for this transmission advantage spans the second chromosome centromere, consisting of three major and several minor interacting loci. To investigate the evolutionary history of this system, we surveyed levels of polymorphism and divergence at six genes that together encompass this pericentromeric region and span seven map units. Interestingly, there was no discernible divergence between SD and SD1 chromosomes for any of these molecular markers. Furthermore, SD chromosomes harbored much less polymorphism than did SD+ chromosomes. The results suggest that the SD system evolved recently, swept to appreciable frequencies worldwide, and carried with it the entire second chromosome centromeric region (roughly 10% of the genome). Despite its well-documented genetic complexity, this coadapted systems appears to have evolved on a time scale that is much shorter than can be gauge using nucleotide substitution data. Finally, the large genomic region hitchhiking with SD indicates that a multilocus, epistatically selected could affect the levels of DNA polymorphism observed in regions of reduced recombination.
Neural correlates of behavior therapy for Tourette's disorder
Date: 2014-01-01
Creator: Thilo Deckersbach, Tina Chou, Jennifer C. Britton, Lindsay E. Carlson, Hannah E., Reese, Jedidiah Siev, Lawrence Scahill, John C. Piacentini, Douglas W. Woods, John T. Walkup, Alan L. Peterson, Darin D. Dougherty, Sabine Wilhelm
Access: Open access
- Tourette's disorder, also called Tourette syndrome (TS), is characterized by motor and vocal tics that can cause significant impairment in daily functioning. Tics are believed to be due to failed inhibition of both associative and motor cortico-striato-thalamo-cortical pathways. Comprehensive Behavioral Intervention for Tics (CBIT), which is an extension of Habit Reversal Therapy (HRT), teaches patients to become more aware of sensations that reliably precede tics (premonitory urges) and to initiate competing movements that inhibit the occurrence of tics. In this study, we used functional magnetic resonance imaging (fMRI) to investigate the neural changes associated with CBIT treatment in subjects with TS. Eight subjects with TS were matched with eight healthy controls in gender, education, age, and handedness. Subjects completed the Visuospatial Priming (VSP) task, a measure of response inhibition, during fMRI scanning before and after CBIT treatment (or waiting period for controls). For TS subjects, we found a significant decrease in striatal (putamen) activation from pre- to post-treatment. Change in VSP task-related activation from pre- to post-treatment in Brodmann's area 47 (the inferior frontal gyrus) was negatively correlated with changes in tic severity. CBIT may promote normalization of aberrant cortico-striato-thalamo-cortical associative and motor pathways in individuals with TS.
Requirement for pectin methyl esterase and preference for fragmented over native pectins for wall-associated kinase-activated, EDS1/PAD4-dependent stress response in arabidopsis
Date: 2014-07-04
Creator: Bruce D. Kohorn, Susan L. Kohorn, Nicholas J. Saba, Victoriano Meco Martinez
Access: Open access
- Background: The wall-associated kinases (WAKs) serve as pectin receptors. Results: A pectin methyl esterase and two transcription factor mutants suppress a dominant WAK allele. Conclusion: De-esterification of pectin is required for WAK activation though EDS1 and PAD4. Significance: The results provide a mechanism for the state of pectins to activate two different pathways. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.
Treasures from Near Eastern Looms
Date: 1981-01-01
Creator: Ernest H. Roberts
Access: Open access
- The exhibition and catalogue held at Bowdoin College Museum of Art, Brunswick, Me., Sept. 11, 1981 to Nov. 22, 1981 and The Textile Museum, Washington, D.C., Dec. 11, 1981 to Feb. 6, 1982 Photographs by Robert H. Stillwell.
Environmental issues in Russia
Date: 2008-12-01
Creator: Laura A. Henry, Vladimir Douhovnikoff
Access: Open access
- This review examines the literature available on the state of the environment and environmental protection in the Russian Federation. As the largest country on Earth, rich in natural resources and biodiversity, Russia's problems and policies have global consequences. Environmental quality and management are influenced by the legacy of Soviet economic planning and authoritarian governance, as well as by Russia's post-Soviet economic recession and current strategies of economic development. Russia achieved a reduction in some pollutants owing to the collapse of industrial production in the 1990s, but many environmental indicators suggest growing degradation. Russia has signed on to a number of international environmental agreements, but its record on implementation is mixed, and it discourages environmental activism. Scholarship on the Russian environment is a limited, but growing, field, constrained by challenges of data availability, yet it offers great potential for testing scientific and social scientific hypotheses. ©2008 by Annual Reviews.
Partisan selective engagement: Evidence from Facebook
Date: 2020-09-01
Creator: Marcel Garz, Jil Sörensen, Daniel F. Stone
Access: Open access
- This study investigates the effects of variation in “congeniality” of news on Facebook user engagement (likes, shares, and comments). We compile an original data set of Facebook posts by 84 German news outlets on politicians that were investigated for criminal offenses from January 2012 to June 2017. We also construct an index of each outlet's media slant by comparing the language of the outlet with that of the main political parties, which allows us to measure the congeniality of the posts. We find that user engagement with congenial posts is higher than with uncongenial ones, especially in terms of likes. The within-outlet, within-topic design allows us to infer that the greater engagement with congenial news is likely driven by psychological and social factors, rather than a desire for accurate or otherwise instrumental information.
Aneuploid chromosomes are highly unstable during DNA transformation of candida albicans∇
Date: 2009-10-01
Creator: Kelly Bouchonville, Anja Forche, Karen E.S. Tang, Anna Selmecki, Judith, Berman
Access: Open access
- Candida albicans strains tolerate aneuploidy, historically detected as karyotype alterations by pulsed-fleld gel electrophoresis and more recently revealed by array comparative genome hybridization, which provides a comprehensive and detailed description of gene copy number. Here, we first retrospectively analyzed 411 expression array experiments to predict the frequency of aneuploidy in different strains. As expected, significant levels of aneuploidy were seen in strains exposed to stress conditions, including UV light and/or sorbose treatment, as well as in strains that are resistant to antifungal drugs. More surprisingly, strains that underwent transformation with DNA displayed the highest frequency of chromosome copy number changes, with strains that were initially aneuploid exhibiting ∼3-fold more copy number changes than strains that were initially diploid. We then prospectively analyzed the effect of lithium acetate (LiOAc) transformation protocols on the stability of trisomie chromosomes. Consistent with the retrospective analysis, the proportion of karyotype changes was highly elevated in strains carrying aneuploid chromosomes. We then tested the hypothesis that stresses conferred by heat and/or LiOAc exposure promote chromosome number changes during DNA transformation procedures. Indeed, a short pulse of very high temperature caused frequent gains and losses of multiple chromosomes or chromosome segments. Furthermore, milder heat exposure over longer periods caused increased levels of loss of heterozygosity. Nonetheless, aneuploid chromosomes were also unstable when strains were transformed by electroporation, which does not include a heat shock step. Thus, aneuploid strains are particularly prone to undergo changes in chromosome number during the stresses of DNA transformation protocols. Copyright © 2009, American Society for Microbiology. All Rights Reserved.
Ernest Haskell (1876-1925): A Retrospective Exhibition: A Portfolio of Selected Work
Date: 1976-01-01
Creator: Ruth Fine, Russell J. Moore
Access: Open access
- "Composition and printing by The Anthoensen Press, Portland, Maine."
Intron Size Correlates Positively with Recombination Rate in Caenorhabditis elegans
Date: 2004-03-01
Creator: Anuphap Prachumwat, Laura DeVincentis, Michael F. Palopoli
Access: Open access
- A negative correlation between intron size and recombination rate has been reported for the Drosophila melanogaster and human genomes. Population-genetic models suggest that this pattern could be caused by an interaction between recombination rate and the efficacy of natural selection. To test this idea, we examined variation in intron size and recombination rate across the genome of the nematode Caenorhabditis elegans. Interestingly, we found that intron size correlated positively with recombination rate in this species.
Next-to-soft corrections to high energy scattering in QCD and gravity
Date: 2017-01-01
Creator: A. Luna, S. Melville, S. G. Naculich, C. D. White
Access: Open access
- We examine the Regge (high energy) limit of 4-point scattering in both QCD and gravity, using recently developed techniques to systematically compute all corrections up to next-to-leading power in the exchanged momentum i.e. beyond the eikonal approximation. We consider the situation of two scalar particles of arbitrary mass, thus generalising previous calculations in the literature. In QCD, our calculation describes power-suppressed corrections to the Reggeisation of the gluon. In gravity, we confirm a previous conjecture that next-to-soft corrections correspond to two independent deflection angles for the incoming particles. Our calculations in QCD and gravity are consistent with the well-known double copy relating amplitudes in the two theories.
Molecular basis of the copulatory plug polymorphism in Caenorhabditis elegans
Date: 2008-08-21
Creator: Michael F. Palopoli, Matthew V. Rockman, Aye TinMaung, Camden Ramsay, Stephen, Curwen, Andrea Aduna, Jason Laurita, Leonid Kruglyak
Access: Open access
- Heritable variation is the raw material for evolutionary change, and understanding its genetic basis is one of the central problems in modern biology. We investigated the genetic basis of a classic phenotypic dimorphism in the nematode Caenorhabditis elegans. Males from many natural isolates deposit a copulatory plug after mating, whereas males from other natural isolates-including the standard wild-type strain (N2 Bristol) that is used in most research laboratories-do not deposit plugs. The copulatory plug is a gelatinous mass that covers the hermaphrodite vulva, and its deposition decreases the mating success of subsequent males. We show that the plugging polymorphism results from the insertion of a retrotransposon into an exon of a novel mucin-like gene, plg-1, whose product is a major structural component of the copulatory plug. The gene is expressed in a subset of secretory cells of the male somatic gonad, and its loss has no evident effects beyond the loss of male mate-guarding. Although C. elegans descends from an obligate-outcrossing, male?female ancestor, it occurs primarily as self-fertilizing hermaphrodites. The reduced selection on male-male competition associated with the origin of hermaphroditism may have permitted the global spread of a loss-of-function mutation with restricted pleiotropy. ©2008 Macmillan Publishers Limited. All rights reserved.
Assessing parameters influencing interhomolog proximity of paired homologous chromosomes in Drosophila This record is embargoed.
- Embargo End Date: 2026-05-20
Date: 2021-01-01
Creator: Molly Margaret Moore
Access: Embargoed
Bowdoin College - Medical School of Maine Catalogue (1912-1913)
Date: 1913-01-01
Access: Open access
- Bowdoin College Bulletin no. 43
Metric properties of diestel-leader groups
Date: 2013-06-01
Creator: Melanie Stein, Jennifer Taback
Access: Open access
Third-Party Politics: Britain, France, and America in an Age of Revolution
Date: 2009-01-01
Creator: Katherine Finnegan
Access: Open access
- "... accompanies an exhibition ... on view at the Bowdoin College Museum of Art from April 9 through July 12, 2009"--P. [4] of cover "This exhibition originated as a research project for an independent study in history on "British society and culture in the long eighteenth century." Katherine Finnegan, Bowdoin College Class of 2009, and Visiting Instructor in History Aaron Windel worked closely with Diana Tuite, Andrew W. Mellon Curatorial Fellow at the Museum"--P. [4] of cover
Probing the mechanism of recognition of ssDNA by the Cdc13-DBD
Date: 2008-03-01
Creator: Aimee M. Eldridge, Deborah S. Wuttke
Access: Open access
- The Saccharomyces cerevisiae protein Cdc13 tightly and specifically binds the conserved G-rich single-stranded overhang at telomeres and plays an essential role in telomere end-protection and length regulation. The 200 residue DNA-binding domain of Cdc13 (Cdc13-DBD) binds an 11mer single-stranded representative of the yeast telomeric sequence [Tel11, d(GTGTGGGTGTG)] with a 3 pM affinity and specificity for three bases (underlined) at the 5′ end. The structure of the Cdc13-DBD bound to Tel11 revealed a large, predominantly aromatic protein interface with several unusual features. The DNA adopts an irregular, extended structure, and the binding interface includes a long (∼30 amino acids) structured loop between strands β2-β3 (L2-3) of an OB-fold. To investigate the mechanism of ssDNA binding, we studied the free and bound states of Cdc13-DBD using NMR spectroscopy. Chemical shift changes indicate that the basic topology of the domain, including L2-3, is essentially intact in the free state. Changes in slow and intermediate time scale dynamics, however, occur in L2-3, while conformational changes distant from the DNA interface suggest an induced fit mechanism for binding in the 'hot spot' for binding affinity and specificity. These data point to an overall binding mechanism well adapted to the heterogeneous nature of yeast telomeres. © 2008 The Author(s).
“The Spirit of Turbulence”: East Indian Political Imaginaries in Early 20th Century British Guiana
Date: 2020-01-01
Creator: Faria A Nasruddin
Access: Open access
- After the abolition of slavery, the Colonial Office instituted an indentured labor scheme that lasted from 1838 to 1917, in which they brought East Indians to the plantation colonies as laborers under five year contracts. Due to the planter class’ desire for permanent sources of labor in British Guiana, the Colonial Government incentivized East Indians to permanently settle. East Indians thus dominated the British Guiana’s agricultural landscape and became the single largest ethnicity in the Colony by 1920. This thesis explores the early negotiations of the meaning of diaspora and diasporic citizenship for East Indians in British Guiana. They comprised a diverse conglomerate of different socio-economic positions: agricultural estate laborers, village residents, and middle-class business professionals. Each socioeconomic group had a different lived experience in the colony and different outlook on what it meant to be a creole-born East Indian. This thesis traces the multiple and contingent ideas of citizenship and nationality that were circulating at the time. Against a backdrop of changing imperial politics that promoted modernity and the discourse of the nation, East Indian visions centered around how to construct permanence, and negotiate belonging. By drawing on colonial documentation–local reports, commission transcripts, personal correspondence–and documentation produced by East Indians–memorandums, speeches, and books–this thesis ultimately argues that East Indians came to view culture as integral to their self-worth and definitions of place within the imperial system. Culture thus became the primary lens to negotiate the various meaning of citizenship and place in the imperial-national moment.
Bowdoin College Catalogue (1906-1907)
Date: 1907-01-01
Access: Open access
- Bowdoin College Bulletin no. 9
Thompson's group F is not almost convex
Date: 2003-12-01
Creator: Sean Cleary, Jennifer Taback
Access: Open access
- We show that Thompson's group F does not satisfy Cannon's almost convexity condition AC(n) for any positive integer n with respect to the standard generating set with two elements. To accomplish this, we construct a family of pairs of elements at distance n from the identity and distance 2 from each other, which are not connected by a path lying inside the n-ball of length less than k for increasingly large k. Our techniques rely upon Fordham's method for calculating the length of a word in F and upon an analysis of the generators' geometric actions on the tree pair diagrams representing elements of F. © 2003 Elsevier Inc. All rights reserved.
A genome-wide screen identifies genes that affect somatic homolog pairing in drosophila
Date: 2012-07-01
Creator: Jack R. Bateman, Erica Larschan, Ryan D'Souza, Lauren S. Marshall, Kyle E., Dempsey, Justine E. Johnson, Barbara G. Mellone, Mitzi I. Kuroda
Access: Open access
- In Drosophila and other Dipterans, homologous chromosomes are in close contact in virtually all nuclei, a phenomenon known as somatic homolog pairing. Although homolog pairing has been recognized for over a century, relatively little is known about its regulation. We performed a genome-wide RNAibased screen that monitored the X-specific localization of the male-specific lethal (MSL) complex, and we identified 59 candidate genes whose knockdown via RNAi causes a change in the pattern of MSL staining that is consistent with a disruption of X-chromosomal homolog pairing. Using DNA fluorescent in situ hybridization (FISH), we confirmed that knockdown of 17 of these genes has a dramatic effect on pairing of the 359 bp repeat at the base of the X. Furthermore, dsRNAs targeting Pr-set7, which encodes an H4K20 methyltransferase, cause a modest disruption in somatic homolog pairing. Consistent with our results in cultured cells, a classical mutation in one of the strongest candidate genes, pebble (pbl), causes a decrease in somatic homolog pairing in developing embryos. Interestingly, many of the genes identified by our screen have known roles in diverse cell-cycle events, suggesting an important link between somatic homolog pairing and the choreography of chromosomes during the cell cycle. © 2012 Bowers et al.
Extinction in competitive lotka-volterra systems
Date: 1995-01-01
Creator: Mary Lou Zeeman
Access: Open access
- It is well known that for the two species autonomous competitive Lotka-Volterra model with no fixed point in the open positive quadrant, one of the species is driven to extinction, whilst the other population stabilises at its own carrying capacity. In this paper we prove a generalisation of this result to arbitrary finite dimension. That is, for the n-species autonomous competitive Lotka-Volterra model, we exhibit simple algebraic criteria on the parameters which guarantee that all but one of the species is driven to extinction, whilst the one remaining population stabilises at its own carrying capacity. © 1995 American Mathematical Society.
Bowdoin College Catalogue (1916-1917)
Date: 1917-01-01
Access: Open access
- Bowdoin College Bulletin no. 70
Strange Progress: Politics of Sexual Violence in Supreme Court Confirmation Hearings from 1991 to 2018 Access to this record is restricted to members of the Bowdoin community. Log in here to view.
Date: 2020-01-01
Creator: Rebecca Berman
Access: Access restricted to the Bowdoin Community
Bowdoin College Catalogue (1932-1933)
Date: 1933-01-01
Access: Open access
- Bowdoin College Bulletin no. 207
Bowdoin College Catalogue (1936-1937)
Date: 1937-01-01
Access: Open access
- Bowdoin College Bulletin no. 234
Incidence, size and spatial structure of clones in second-growth stands of coast redwood, Sequoia sempervirens (Cupressaceae)
Date: 2004-07-01
Creator: Vladimir Douhovnikoff, Adelaide M. Cheng, Richard S. Dodd
Access: Open access
- The ecology and evolutionary potential of coast redwood (Sequoia sempervirens) is significantly influenced by the important role clonal spread plays in its reproduction and site persistence. In nine second-growth stands, amplified fragment length polymorphisms (AFLPs) were used to identify redwood clonal architecture. Clones (multistem genets) dominated sites by representing an average of 70% of stems measured, ranging in size from two to 20 stems. As a result, a relatively small number of genets can monopolize a disproportionate amount of site resources, are more likely to persist over time, and have greater on-site genetic representation. Clones were not limited to fairy-ring structures, but consisted of a wide range of shapes including concentric rings, ring chains, disjunct, and linear structures. Between-ramet distances of up to 40 m were measured, indicating that clonal reproduction is not limited to basal stump resprouting. Clonal structure in second-growth stands was similar to earlier reports from old growth, emphasizing the importance of site persistence and long-term, gradual site development. Smaller ramet numbers per genet in old growth is probably due to local within-genet self thinning. Management and conservation of redwoods will benefit from a better understanding of the dynamics and structure of clonal spread in these forests.
Mass Spectrometry Quantification, Localization, and Discovery of Feeding-Related Neuropeptides in Cancer borealis
Date: 2021-02-17
Creator: Kellen Delaney, Mengzhou Hu, Tessa Hellenbrand, Patsy S. Dickinson, Michael P., Nusbaum, Lingjun Li
Access: Open access
- The crab Cancer borealis nervous system is an important model for understanding neural circuit dynamics and modulation, but the identity of neuromodulatory substances and their influence on circuit dynamics in this system remains incomplete, particularly with respect to behavioral state-dependent modulation. Therefore, we used a multifaceted mass spectrometry (MS) method to identify neuropeptides that differentiate the unfed and fed states. Duplex stable isotope labeling revealed that the abundance of 80 of 278 identified neuropeptides was distinct in ganglia and/or neurohemal tissue from fed vs unfed animals. MS imaging revealed that an additional 7 and 11 neuropeptides exhibited altered spatial distributions in the brain and the neuroendocrine pericardial organs (POs), respectively, during these two feeding states. Furthermore, de novo sequencing yielded 69 newly identified putative neuropeptides that may influence feeding state-related neuromodulation. Two of these latter neuropeptides were determined to be upregulated in PO tissue from fed crabs, and one of these two peptides influenced heartbeat in ex vivo preparations. Overall, the results presented here identify a cohort of neuropeptides that are poised to influence feeding-related behaviors, providing valuable opportunities for future functional studies.
Bowdoin College Catalogue (1970-1971)
Date: 1971-01-01
Access: Open access
- Bowdoin College Bulletin no. 378
Molecular and mass spectral identification of the broadly conserved decapod crustacean neuropeptide pQIRYHQCYFNPISCF: The first PISCF-allatostatin (Manduca sexta- or C-type allatostatin) from a non-insect
Date: 2010-01-01
Creator: Elizabeth A. Stemmler, Emily A. Bruns, Christopher R. Cashman, Patsy S. Dickinson, Andrew E., Christie
Access: Open access
- The PISCF-allatostatins (Manduca sexta- or C-type allatostatins) are a family of pentadecapeptides characterized by a pyroglutamine blocked N-terminus, an unamidated-PISCF C-terminus, and a disulfide bridge between two internal Cys residues. Several isoforms of PISCF-AST are known, all from holometabolous insects. Using a combination of transcriptomics and mass spectrometry, we have identified the first PISCF-type peptides from a non-insect species. In silico analysis of crustacean ESTs identified several Litopenaeus vannamei (infraorder Penaeidea) transcripts encoding putative PISCF-AST precursors. Translation of these ESTs, with subsequent prediction of their putative post-translational processing, revealed the existence of as many as three PISCF-type peptides, including pQIRYHQCYFNPISCF (disulfide bridging between Cys7 and Cys14). Although none of the predicted isoforms was detected by mass spectrometry in L. vannamei, MALDI-FTMS mass profiling identified an m/z signal corresponding to pQIRYHQCYFNPISCF (disulfide bridge present) in neural tissue from 28 other decapods, which included members of six infraorders (Stenopodidea, Astacidea, Thalassinidea, Achelata, Anomura and Brachyura). Further characterization of the peptide using SORI-CID and chemical derivatization/enzymatic digestion supported the theorized structure. In both the crab Cancer borealis and the lobster Homarus americanus, MALDI-based tissue surveys suggest that pQIRYHQCYFNPISCF is broadly distributed in the nervous system; it was also detected in the posterior midgut caecum. Collectively, our data show that members of the PISCF-AST family are not restricted to the holometabolous insects, but instead may be broadly conserved within the Pancrustacea. Moreover, our data suggest that one highly conserved PISCF-type peptide, pQIRYHQCYFN-PISCF, is present in decapod crustaceans, functioning as a brain-gut paracrine/hormone. © 2009 Elsevier Inc. All rights reserved.
Identification and cardiotropic actions of sulfakinin peptides in the American lobster Homarus americanus
Date: 2007-07-01
Creator: Patsy S. Dickinson, Jake S. Stevens, Szymon Rus, Henry R. Brennan, Christopher C., Goiney, Christine M. Smith, Lingjun Li, David W. Towle, Andrew E. Christie
Access: Open access
- In arthropods, a group of peptides possessing a -Y(SO3H)GHM/ LRFamide carboxy-terminal motif have been collectively termed the sulfakinins. Sulfakinin isoforms have been identified from numerous insect species. In contrast, members of this peptide family have thus far been isolated from just two crustaceans, the penaeid shrimp Penaeus monodon and Litopenaeus vannamei. Here, we report the identification of a cDNA encoding prepro-sulfakinin from the American lobster Homarus americanus. Two sulfakinin-like sequences were identified within the open-reading frame of the cDNA. Based on modifications predicted by peptide modeling programs, and on homology to the known isoforms of sulfakinin, particularly those from shrimp, the mature H. americanus sulfakinins were hypothesized to be pEFDEY(SO3H)GHMRFamide (Hoa-SK I) and GGGEY(SO3H)DDY(SO3H)GHLRFamide (Hoa-SK II). Hoa-SK I is identical to one of the previously identified shrimp sulfakinins, while Hoa-SK II is a novel isoform. Exogenous application of either synthetic Hoa-SK I or Hoa-SK II to the isolated lobster heart increased both the frequency and amplitude of spontaneous heart contractions. In preparations in which spontaneous contractions were irregular, both peptides increased the regularity of the heartbeat. Our study provides the first molecular characterization of a sulfakinin-encoding cDNA from a crustacean, as well as the first demonstration of bioactivity for native sulfakinins in this group of arthropods.
Bowdoin College Catalogue (1951-1952)
Date: 1952-01-01
Access: Open access
- Bowdoin College Bulletin no. 303
To what extent may peptide receptor gene diversity/complement contribute to functional flexibility in a simple pattern-generating neural network?
Date: 2019-06-01
Creator: Patsy S. Dickinson, J. Joe Hull, Alexandra Miller, Emily R. Oleisky, Andrew E., Christie
Access: Open access
- Peptides are known to contribute to central pattern generator (CPG) flexibility throughout the animal kingdom. However, the role played by receptor diversity/complement in determining this functional flexibility is not clear. The stomatogastric ganglion (STG) of the crab, Cancer borealis, contains CPGs that are models for investigating peptidergic control of rhythmic behavior. Although many Cancer peptides have been identified, their peptide receptors are largely unknown. Thus, the extent to which receptor diversity/complement contributes to modulatory flexibility in this system remains unresolved. Here, a Cancer mixed nervous system transcriptome was used to determine the peptide receptor complement for the crab nervous system as a whole. Receptors for 27 peptide families, including multiple receptors for some groups, were identified. To increase confidence in the predicted sequences, receptors for allatostatin-A, allatostatin-B, and allatostatin-C were cloned, sequenced, and expressed in an insect cell line; as expected, all three receptors trafficked to the cell membrane. RT-PCR was used to determine whether each receptor was expressed in the Cancer STG. Transcripts for 36 of the 46 identified receptors were amplified; these included at least one for each peptide family except RYamide. Finally, two peptides untested on the crab STG were assessed for their influence on its motor outputs. Myosuppressin, for which STG receptors were identified, exhibited clear modulatory effects on the motor patterns of the ganglion, while a native RYamide, for which no STG receptors were found, elicited no consistent modulatory effects. These data support receptor diversity/complement as a major contributor to the functional flexibility of CPGs.