Showing 141 - 150 of 733 Items
Homotypic and heterotypic continuity of fine-grained temperament during infancy, toddlerhood, and early childhood
Date: 2008-07-01
Creator: Samuel P. Putnam, Mary K. Rothbart, Maria A. Gartstein
Access: Open access
- Longitudinal continuity was investigated for fine-grained and factor-level aspects of temperament measured with the Infant Behaviour Questionnaire-Revised (IBQ-R), Early Childhood Behaviour Questionnaire (ECBQ), and Children's Behaviour Questionnaire (CBQ). Considerable homotypic continuity was found. Convergent and discriminant validity of the measures was supported, as all fine-grained dimensions exhibited stability across adjacent measurement periods, and all scales found on both the ECBQ and CBQ were most highly correlated with their equivalent scales. At the factor level, Surgency and Negative Affect factors were stable across all time points, and Effortful Control/Regulatory Capacity was stable across adjacent time periods. High-Intensity Pleasure, Activity Level, and Impulsivity contributed strongly to continuity of Surgency, and Sadness, Frustration, and Falling Reactivity played strong roles in the continuity of Negative Affect. Heterotypic continuity was also found. High levels of Infant Surgency predicted high toddler Effortful Control, whereas high toddler Surgency predicted low Effortful Control in preschoolers. Infant Surgency dimensions especially predicted Toddler Attention Shifting and Low-Intensity Pleasure, and toddler Activity Level was most closely associated with later deficits in Effortful Control. Inverse relations were also obtained between Negative Affect and Effortful Control, with substantial negative connections between toddler Negative Affect and preschool Attention Focusing and Inhibitory Control. Copyright © 2008 John Wiley & Sons, Ltd.
Recommendations for obtaining unbiased chlorophyll estimates from in situ chlorophyll fluorometers: A global analysis of WET Labs ECO sensors
Date: 2017-06-01
Creator: Collin Roesler, Julia Uitz, Hervé Claustre, Emmanuel Boss, Xiaogang, Xing, Emanuele Organelli, Nathan Briggs, Annick Bricaud, Catherine Schmechtig, Antoine Poteau, Fabrizio D'Ortenzio, Josephine Ras, Susan Drapeau, Nils Haëntjens, Marie Barbieux
Access: Open access
- Chlorophyll fluorometers provide the largest in situ global data set for estimating phytoplankton biomass because of their ease of use, size, power consumption, and relatively low price. While in situ chlorophyll a (Chl) fluorescence is proxy for Chl a concentration, and hence phytoplankton biomass, there exist large natural variations in the relationship between in situ fluorescence and extracted Chl a concentration. Despite this large natural variability, we present here a global validation data set for the WET Labs Environmental Characterization Optics (ECO) series chlorophyll fluorometers that suggests a factor of 2 overestimation in the factory calibrated Chl a estimates for this specific manufacturer and series of sensors. We base these results on paired High Pressure Liquid Chromatography (HPLC) and in situ fluorescence match ups for which non-photochemically quenched fluorescence observations were removed. Additionally, we examined matchups between the factory-calibrated in situ fluorescence and estimates of chlorophyll concentration determined from in situ radiometry, absorption line height, NASA's standard ocean color algorithm as well as laboratory calibrations with phytoplankton monocultures spanning diverse species that support the factor of 2 bias. We therefore recommend the factor of 2 global bias correction be applied for the WET Labs ECO sensors, at the user level, to improve the global accuracy of chlorophyll concentration estimates and products derived from them. We recommend that other fluorometer makes and models should likewise undergo global analyses to identify potential bias in factory calibration.
The neuromuscular transform of the lobster cardiac system explains the opposing effects of a neuromodulator on muscle output
Date: 2013-10-18
Creator: Alex H. Williams, Andrew Calkins, Timothy O'Leary, Renee Symonds, Eve, Marder, Patsy S. Dickinson
Access: Open access
- Motor neuron activity is transformed into muscle movement through a cascade of complex molecular and biomechanical events. This nonlinear mapping of neural inputs to motor behaviors is called the neuromuscular transform (NMT). We examined the NMT in the cardiac system of the lobster Homarus americanus by stimulating a cardiac motor nerve with rhythmic bursts of action potentials and measuring muscle movements in response to different stimulation patterns. The NMT was similar across preparations, which suggested that it could be used to predict muscle movement from spontaneous neural activity in the intact heart. We assessed this possibility across semi-intact heart preparations in two separate analyses. First, we performed a linear regression analysis across 122 preparations in physiological saline to predict muscle movements from neural activity. Under these conditions, the NMT was predictive of contraction duty cycle but was unable to predict contraction amplitude, likely as a result of uncontrolled interanimal variability. Second, we assessed the ability of the NMT to predict changes in motor output induced by the neuropeptide C-type allatostatin. Wiwatpanit et al. (2012) showed that bath application of C-type allatostatin produced either increases or decreases in the amplitude of the lobster heart contractions. We show that an important component of these preparation-dependent effects can arise from quantifiable differences in the basal state of each preparation and the nonlinear form of the NMT. These results illustrate how properly characterizing the relationships between neural activity and measurable physiological outputs can provide insight into seemingly idiosyncratic effects of neuromodulators across individuals. © 2013 the authors.
The quantitative genetics of incipient speciation: Heritability and genetic correlations of skeletal traits in populations of diverging favia fragum ecomorphs
Date: 2011-12-01
Creator: David B. Carlon, Ann F. Budd, Catherine Lippé, Rose L. Andrew
Access: Open access
- Recent speciation events provide potential opportunities to understand the microevolution of reproductive isolation. We used a marker-based approach and a common garden to estimate the additive genetic variation in skeletal traits in a system of two ecomorphs within the coral species Favia fragum: a Tall ecomorph that is a seagrass specialist, and a Short ecomorph that is most abundant on coral reefs. Considering both ecomorphs, we found significant narrow-sense heritability (h 2) in a suite of measurements that define corallite architecture, and could partition additive and nonadditive variation for some traits. We found positive genetic correlations for homologous height and length measurements among different types of vertical plates (costosepta) within corallites, but negative correlations between height and length within, as well as between costosepta. Within ecomorphs, h 2 estimates were generally lower, compared to the combined ecomorph analysis. Marker-based estimates of h 2 were comparable to broad-sense heritability (H) obtained from parent-offspring regressions in a common garden for most traits, and similar genetic co-variance matrices for common garden and wild populations may indicate relatively small G × E interactions. The patterns of additive genetic variation in this system invite hypotheses of divergent selection or genetic drift as potential evolutionary drivers of reproductive isolation. © 2011 The Author(s). Evolution© 2011 The Society for the Study of Evolution.
Vulnerability of high-latitude soil organic carbon in North America to disturbance
Date: 2011-12-01
Creator: Guido Grosse, Jennifer Harden, Merritt Turetsky, A. David McGuire, Philip, Camill, Charles Tarnocai, Steve Frolking, Edward A.G. Schuur, Torre Jorgenson, Sergei Marchenko, Vladimir Romanovsky, Kimberly P. Wickland, Nancy French, Mark Waldrop, Laura Bourgeau-Chavez, Robert G. Striegl
Access: Open access
- This synthesis addresses the vulnerability of the North American high-latitude soil organic carbon (SOC) pool to climate change. Disturbances caused by climate warming in arctic, subarctic, and boreal environments can result in significant redistribution of C among major reservoirs with potential global impacts. We divide the current northern high-latitude SOC pools into (1) near-surface soils where SOC is affected by seasonal freeze-thaw processes and changes in moisture status, and (2) deeper permafrost and peatland strata down to several tens of meters depth where SOC is usually not affected by short-term changes. We address key factors (permafrost, vegetation, hydrology, paleoenvironmental history) and processes (C input, storage, decomposition, and output) responsible for the formation of the large high-latitude SOC pool in North America and highlight how climate-related disturbances could alter this pool's character and size. Press disturbances of relatively slow but persistent nature such as top-down thawing of permafrost, and changes in hydrology, microbiological communities, pedological processes, and vegetation types, as well as pulse disturbances of relatively rapid and local nature such as wildfires and thermokarst, could substantially impact SOC stocks. Ongoing climate warming in the North American high-latitude region could result in crossing environmental thresholds, thereby accelerating press disturbances and increasingly triggering pulse disturbances and eventually affecting the C source/sink net character of northern high-latitude soils. Finally, we assess postdisturbance feedbacks, models, and predictions for the northern high-latitude SOC pool, and discuss data and research gaps to be addressed by future research. Copyright 2011 by the American Geophysical Union.
Drag, drafting, and mechanical interactions in canopies of the red alga Chondrus crispus
Date: 2001-01-01
Creator: A. S. Johnson
Access: Open access
- Dense algal canopies, which are common in the lower intertidal and shallow subtidal along rocky coastlines, can alter flow-induced forces in their vicinity. Alteration of flow-induced forces on algal thalli may ameliorate risk of dislodgement and will affect important physiological processes, such as rates of photosynthesis. This study found that the force experienced by a thallus of the red alga Chondrus crispus (Stackhouse) at a given flow speed within a flow tank depended upon (1) the density of the canopy surrounding the thallus, (2) the position of the thallus within the canopy, and (3) the length of the stipe of the thallus relative to the height of the canopy. At all flow speeds, a solitary thallus experienced higher forces than a thallus with neighbors. A greater than 65% reduction in force occurred when the thallus drafted in the region of slower velocities that occurs in the wake region of even a single upstream neighbor, similar to the way racing bicyclists draft one behind the other. Mechanical interactions between thalli were important to forces experienced within canopies. A thallus on the upstream edge of a canopy experienced 6% less force than it did when solitary, because the canopy physically supported it. A thallus in the middle of a canopy experienced up to 83% less force than a solitary thallus, and forces decreased with increasing canopy density. Thus, a bushy morphology that increases drag on a solitary thallus may function to decrease forces experienced by that thallus when it is surrounded by a canopy, because that morphology increases physical support provided by neighbors.
Estimated stocks of circumpolar permafrost carbon with quantified uncertainty ranges and identified data gaps
Date: 2014-12-01
Creator: G. Hugelius, J. Strauss, S. Zubrzycki, J. W. Harden, E. A.G., Schuur, C. L. Ping, L. Schirrmeister, G. Grosse, G. J. Michaelson, C. D. Koven, J. A. O'Donnell, B. Elberling, U. Mishra, P. Camill, Z. Yu, J. Palmtag
Access: Open access
- Soils and other unconsolidated deposits in the northern circumpolar permafrost region store large amounts of soil organic carbon (SOC). This SOC is potentially vulnerable to remobilization following soil warming and permafrost thaw, but SOC stock estimates were poorly constrained and quantitative error estimates were lacking. This study presents revised estimates of permafrost SOC stocks, including quantitative uncertainty estimates, in the 0-3 m depth range in soils as well as for sediments deeper than 3 m in deltaic deposits of major rivers and in the Yedoma region of Siberia and Alaska. Revised estimates are based on significantly larger databases compared to previous studies. Despite this there is evidence of significant remaining regional data gaps. Estimates remain particularly poorly constrained for soils in the High Arctic region and physiographic regions with thin sedimentary overburden (mountains, highlands and plateaus) as well as for deposits below 3 m depth in deltas and the Yedoma region. While some components of the revised SOC stocks are similar in magnitude to those previously reported for this region, there are substantial differences in other components, including the fraction of perennially frozen SOC. Upscaled based on regional soil maps, estimated permafrost region SOC stocks are 217 ± 12 and 472 ± 27 Pg for the 0-0.3 and 0-1 m soil depths, respectively (±95% confidence intervals). Storage of SOC in 0-3 m of soils is estimated to 1035 ± 150 Pg. Of this, 34 ± 16 Pg C is stored in poorly developed soils of the High Arctic. Based on generalized calculations, storage of SOC below 3 m of surface soils in deltaic alluvium of major Arctic rivers is estimated as 91 ± 52 Pg. In the Yedoma region, estimated SOC stocks below 3 m depth are 181 ± 54 Pg, of which 74 ± 20 Pg is stored in intact Yedoma (late Pleistocene ice- and organic-rich silty sediments) with the remainder in refrozen thermokarst deposits. Total estimated SOC storage for the permafrost region is ∼1300 Pg with an uncertainty range of ∼1100 to 1500 Pg. Of this, ∼500 Pg is in non-permafrost soils, seasonally thawed in the active layer or in deeper taliks, while ∼800 Pg is perennially frozen. This represents a substantial ∼300 Pg lowering of the estimated perennially frozen SOC stock compared to previous estimates.
Aneuploidy and isochromosome formation in drug-resistant Candida albicans
Date: 2006-07-21
Creator: Anna Selmecki, Anja Forche, Judith Berman
Access: Open access
- Resistance to the limited number of available antifungal drugs is a serious problem in the treatment of Candida albicans. We found that aneuploidy in general and a specific segmental aneuploidy, consisting of an isochromosome composed of the two left arms of chromosome 5, were associated with azole resistance. The isochromosome forms around a single centromere flanked by an inverted repeat and was found as an independent chromosome or fused at the telomere to a full-length homolog of chromosome 5. Increases and decreases in drug resistance were strongly associated with gain and loss of this isochromosome, which bears genes expressing the enzyme in the ergosterol pathway targeted by azole drugs, efflux pumps, and a transcription factor that positively regulates a subset of efflux pump genes.
Complete mitochondrial genomes of the human follicle mites Demodex brevis and D. folliculorum: Novel gene arrangement, truncated tRNA genes, and ancient divergence between species
Date: 2014-12-16
Creator: Michael F. Palopoli, Samuel Minot, Dorothy Pei, Alicia Satterly, Julie, Endrizzi
Access: Open access
- Background: Follicle mites of the genus Demodex are found on a wide diversity of mammals, including humans. surprisingly little is known, however, about the evolution of this association. Additional sequence information promises to facilitate studies of Demodex variation within and between host species. Here we report the complete mitochondrial genome sequences of two species of Demodex known to live on humans-Demodex brevis and D. folliculorum-which are the first such genomes available for any member of the genus. We analyzed these sequences to gain insight into the evolution of mitochondrial genomes within the Acariformes. We also used relaxed molecular clock analyses, based on alignments of mitochondrial proteins, to estimate the time of divergence between these two species. Results: Both Demodex genomes shared a novel gene order that differs substantially from the ancestral chelicerate pattern, with transfer RNA (tRNA) genes apparently having moved much more often than other genes. Mitochondrial tRNA genes of both species were unusually short, with most of them unable to encode tRNAs that could fold into the canonical cloverleaf structure. indeed, several examples lacked both D- and T-arms. Finally, the high level of sequence divergence observed between these species suggests that these two lineages last shared a common ancestor no more recently than about 87 mya. Conclusions: Among Acariformes, rearrangements involving tRNA genes tend to occur much more often than those involving other genes. The truncated tRNA genes observed in both Demodex species would seem to require the evolution of extensive tRNA editing capabilities and/or coevolved interacting factors. The molecular machinery necessary for these unusual tRNAs to function might provide an avenue for developing treatments of skin disorders caused by Demodex. The deep divergence time estimated between these two species sets a lower bound on the time that Demodex have been coevolving with their mammalian hosts, and supports the hypothesis that there was an early split within the genus Demodex into species that dwell in different skin microhabitats.
The N = 2 U(N) gauge theory prepotential and periods from a perturbative matrix model calculation
Date: 2003-02-24
Creator: Stephen G. Naculich, Howard J. Schnitzer, Niclas Wyllard
Access: Open access
- We perform a completely perturbative matrix model calculation of the physical low-energy quantities of the N = 2 U(N) gauge theory. Within the matrix model framework we propose a perturbative definition of the periods a i in terms of certain tadpole diagrams, and check our conjecture up to first order in the gauge theory instanton expansion. The prescription does not require knowledge of the Seiberg-0Witten differential or curve.We also compute the N = 2 prepotential F(a) perturbatively up to the first-instanton level, finding agreement with the known result. 2002 Elsevier Science B.V. All rights reserved.