Showing 231 - 240 of 274 Items
Date: 2023-01-01
Creator: Maya Y. Chandar-Kouba
Access: Open access
- Monitoring forest carbon storage is necessary in accurately modelling the global carbon cycle. In the Northeast, terrestrial forests represent a major carbon sink with above-ground biomass (AGB) accounting for 40% of stored forest carbon. Therefore, understanding how AGB varies spatiotemporally is essential in predicting future carbon storage. Repeated measurements in permanent, long-term plots provide an opportunity to examine how carbon stored in AGB is changing over time. I used 29 years of data from the Harvard Forest Environmental Monitoring Systems (HF EMS) Site to determine how stand composition, intrinsic factors, and extrinsic environmental factors influenced rates of carbon storage in AGB over time. Using a partition around medoids (PAM) clustering method, I separated the 34 ground plots at the EMS stand into their respective stand types. I found that each stand type at the HF EMS plots accumulates carbon at consistent rates throughout the study period, although rates of carbon accumulation between stands were significantly different. Red Pine stands experience a rapid decline in biomass in 2018 due to the introduction of the Southern Pine Beetle. Across all stand types, sporadic mortality events determine variations in yearly rates of carbon accumulation, although this has little significant influence on total AGB accumulation. Leaf area index (LAI) and foliar N contents have no effect on growth increments. Extrinsic environmental variables had mixed effects on growth and mortality, highlighting the complexities of predicting forest carbon storage under changing climate conditions.

- Restriction End Date: 2028-06-01
Date: 2023-01-01
Creator: Ean Lev Small
Access: Access restricted to the Bowdoin Community

- Embargo End Date: 2026-05-18
Date: 2023-01-01
Creator: Holden D. Hadfield
Access: Embargoed

- Embargo End Date: 2028-05-17
Date: 2023-01-01
Creator: Lyn Stephanie Miranda Portillo
Access: Embargoed
Date: 2024-01-01
Creator: Jared Lynch
Access: Open access
- The mitochondrial genome has historically been relegated to a neutral genetic marker, but new evidence suggests mitochondrial DNA to be a target for adaptation to environmental stress. The invasive European green crab (Carcinus maenas) exemplifies this in the Gulf of Maine’s hybrid zone, where interbreeding populations exhibit thermal tolerances influenced by mitochondrial genotype. To better understand the mechanism behind this phenomenon, the effect of mitochondrial genotype on mitochondrial activity was tested by measuring mtDNA copy number (mtCN) and the activity of complex I, II, and IV of the electron transport system via high-resolution respirometry. Mitochondria isolated from frozen heart tissue were measured at three temperature points—5°C, 25°C, and 37°C—to represent thermal stresses and a control. It was predicted that cold-adapted haplogroups would exhibit both higher mtCN and increased activity for each complex, either across all temperatures or exclusively at 5°C compared to a warm-adapted haplogroup. Initial comparisons of mitochondria from fresh and frozen tissue at 25°C found lower activity for complex II and IV in frozen extracts, but they continued to be used for convenience. No differences were observed across haplogroups for mtCN or high-resolution respirometry, suggesting that mitochondrial activity does not underlie differences in thermal tolerance. However, temperature greatly influenced activity measurements with complex II and IV exhibiting the highest rates at 37°C while complex I exhibited optimal activity at 25°C. This study represents the first of its kind for C. maenas, providing a foundation for future experiments to continue exploring mitochondria in the context of adaptive evolution.

Date: 2025-01-01
Creator: Cara Sydney Nova Fields
Access: Access restricted to the Bowdoin Community

- Embargo End Date: 2026-05-18
Date: 2023-01-01
Creator: Bridget Marjorie Patterson
Access: Embargoed
Date: 2017-05-01
Creator: Chaiyaboot Ariyachet, Christian Beißel, Xiang Li, Selena Lorrey, Olivia, Mackenzie, Patrick M. Martin, Katharine O'Brien, Tossapol Pholcharee, Sue Sim, Heike Krebber, Anne E. McBride
Access: Open access
- The morphological transition of the opportunistic fungal pathogen Candida albicans from budding to hyphal growth has been implicated in its ability to cause disease in animal models. Absence of SR-like RNA-binding protein Slr1 slows hyphal formation and decreases virulence in a systemic candidiasis model, suggesting a role for post-transcriptional regulation in these processes. SR (serine–arginine)-rich proteins influence multiple steps in mRNA metabolism and their localization and function are frequently controlled by modification. We now demonstrate that Slr1 binds to polyadenylated RNA and that its intracellular localization is modulated by phosphorylation and methylation. Wildtype Slr1-GFP is predominantly nuclear, but also co-fractionates with translating ribosomes. The non-phosphorylatable slr1-6SA-GFP protein, in which six serines in SR/RS clusters are substituted with alanines, primarily localizes to the cytoplasm in budding cells. Intriguingly, hyphal cells display a slr1-6SA-GFP focus at the tip near the Spitzenkörper, a vesicular structure involved in molecular trafficking to the tip. The presence of slr1-6SA-GFP hyphal tip foci is reduced in the absence of the mRNA-transport protein She3, suggesting that unphosphorylated Slr1 associates with mRNA–protein complexes transported to the tip. The impact of SLR1 deletion on hyphal formation and function thus may be partially due to a role in hyphal mRNA transport.
Date: 2001-07-13
Creator: Anne E. McBride, Pamela A. Silver
Access: Open access
Date: 2000-02-04
Creator: Anne E. McBride, Valerie H. Weiss, Heidi K. Kim, James M. Hogle, Pamela A., Silver
Access: Open access
- Many eukaryotic RNA-binding proteins are modified by methylation of arginine residues. The yeast Saccharomyces cerevisiae contains one major arginine methyltransferase, Hmt1p/Rmt1p, which is not essential for normal cell growth. However, cells missing HMT1 and also bearing mutations in the mRNA-binding proteins Np13p or Cbp80p can no longer survive, providing genetic backgrounds in which to study Hmt1p function. We now demonstrate that the catalytically active form of Hmt1p is required for its activity in vivo. Amino acid changes in the putative Hmt1p S-adenosyl-L-methionine-binding site were generated and shown to be unable to catalyze methylation of Np13p in vitro and in vivo or to restore growth to strains that require HMT1. In addition these mutations affect nucleocytoplasmic transport of Np13p. A cold- sensitive mutant of Hmt1p was generated and showed reduced methylation of Np13p, but not of other substrates, at 14 °C. These results define new aspects of Hmt1 and reveal the importance of its activity in vivo.