Showing 101 - 150 of 5840 Items
Date: 1976-01-01
Creator: Ruth Fine, Russell J. Moore
Access: Open access
- "Composition and printing by The Anthoensen Press, Portland, Maine."
Date: 2004-03-01
Creator: Anuphap Prachumwat, Laura DeVincentis, Michael F. Palopoli
Access: Open access
- A negative correlation between intron size and recombination rate has been reported for the Drosophila melanogaster and human genomes. Population-genetic models suggest that this pattern could be caused by an interaction between recombination rate and the efficacy of natural selection. To test this idea, we examined variation in intron size and recombination rate across the genome of the nematode Caenorhabditis elegans. Interestingly, we found that intron size correlated positively with recombination rate in this species.
Date: 2017-01-01
Creator: A. Luna, S. Melville, S. G. Naculich, C. D. White
Access: Open access
- We examine the Regge (high energy) limit of 4-point scattering in both QCD and gravity, using recently developed techniques to systematically compute all corrections up to next-to-leading power in the exchanged momentum i.e. beyond the eikonal approximation. We consider the situation of two scalar particles of arbitrary mass, thus generalising previous calculations in the literature. In QCD, our calculation describes power-suppressed corrections to the Reggeisation of the gluon. In gravity, we confirm a previous conjecture that next-to-soft corrections correspond to two independent deflection angles for the incoming particles. Our calculations in QCD and gravity are consistent with the well-known double copy relating amplitudes in the two theories.
Date: 2008-08-21
Creator: Michael F. Palopoli, Matthew V. Rockman, Aye TinMaung, Camden Ramsay, Stephen, Curwen, Andrea Aduna, Jason Laurita, Leonid Kruglyak
Access: Open access
- Heritable variation is the raw material for evolutionary change, and understanding its genetic basis is one of the central problems in modern biology. We investigated the genetic basis of a classic phenotypic dimorphism in the nematode Caenorhabditis elegans. Males from many natural isolates deposit a copulatory plug after mating, whereas males from other natural isolates-including the standard wild-type strain (N2 Bristol) that is used in most research laboratories-do not deposit plugs. The copulatory plug is a gelatinous mass that covers the hermaphrodite vulva, and its deposition decreases the mating success of subsequent males. We show that the plugging polymorphism results from the insertion of a retrotransposon into an exon of a novel mucin-like gene, plg-1, whose product is a major structural component of the copulatory plug. The gene is expressed in a subset of secretory cells of the male somatic gonad, and its loss has no evident effects beyond the loss of male mate-guarding. Although C. elegans descends from an obligate-outcrossing, male?female ancestor, it occurs primarily as self-fertilizing hermaphrodites. The reduced selection on male-male competition associated with the origin of hermaphroditism may have permitted the global spread of a loss-of-function mutation with restricted pleiotropy. ©2008 Macmillan Publishers Limited. All rights reserved.

- Embargo End Date: 2026-05-20
Date: 2021-01-01
Creator: Molly Margaret Moore
Access: Embargoed
Date: 1913-01-01
Access: Open access
- Bowdoin College Bulletin no. 43
Date: 2013-06-01
Creator: Melanie Stein, Jennifer Taback
Access: Open access
Date: 2009-01-01
Creator: Katherine Finnegan
Access: Open access
- "... accompanies an exhibition ... on view at the Bowdoin College Museum of Art from April 9 through July 12, 2009"--P. [4] of cover "This exhibition originated as a research project for an independent study in history on "British society and culture in the long eighteenth century." Katherine Finnegan, Bowdoin College Class of 2009, and Visiting Instructor in History Aaron Windel worked closely with Diana Tuite, Andrew W. Mellon Curatorial Fellow at the Museum"--P. [4] of cover
Date: 2008-03-01
Creator: Aimee M. Eldridge, Deborah S. Wuttke
Access: Open access
- The Saccharomyces cerevisiae protein Cdc13 tightly and specifically binds the conserved G-rich single-stranded overhang at telomeres and plays an essential role in telomere end-protection and length regulation. The 200 residue DNA-binding domain of Cdc13 (Cdc13-DBD) binds an 11mer single-stranded representative of the yeast telomeric sequence [Tel11, d(GTGTGGGTGTG)] with a 3 pM affinity and specificity for three bases (underlined) at the 5′ end. The structure of the Cdc13-DBD bound to Tel11 revealed a large, predominantly aromatic protein interface with several unusual features. The DNA adopts an irregular, extended structure, and the binding interface includes a long (∼30 amino acids) structured loop between strands β2-β3 (L2-3) of an OB-fold. To investigate the mechanism of ssDNA binding, we studied the free and bound states of Cdc13-DBD using NMR spectroscopy. Chemical shift changes indicate that the basic topology of the domain, including L2-3, is essentially intact in the free state. Changes in slow and intermediate time scale dynamics, however, occur in L2-3, while conformational changes distant from the DNA interface suggest an induced fit mechanism for binding in the 'hot spot' for binding affinity and specificity. These data point to an overall binding mechanism well adapted to the heterogeneous nature of yeast telomeres. © 2008 The Author(s).
Date: 2020-01-01
Creator: Faria A Nasruddin
Access: Open access
- After the abolition of slavery, the Colonial Office instituted an indentured labor scheme that lasted from 1838 to 1917, in which they brought East Indians to the plantation colonies as laborers under five year contracts. Due to the planter class’ desire for permanent sources of labor in British Guiana, the Colonial Government incentivized East Indians to permanently settle. East Indians thus dominated the British Guiana’s agricultural landscape and became the single largest ethnicity in the Colony by 1920. This thesis explores the early negotiations of the meaning of diaspora and diasporic citizenship for East Indians in British Guiana. They comprised a diverse conglomerate of different socio-economic positions: agricultural estate laborers, village residents, and middle-class business professionals. Each socioeconomic group had a different lived experience in the colony and different outlook on what it meant to be a creole-born East Indian. This thesis traces the multiple and contingent ideas of citizenship and nationality that were circulating at the time. Against a backdrop of changing imperial politics that promoted modernity and the discourse of the nation, East Indian visions centered around how to construct permanence, and negotiate belonging. By drawing on colonial documentation–local reports, commission transcripts, personal correspondence–and documentation produced by East Indians–memorandums, speeches, and books–this thesis ultimately argues that East Indians came to view culture as integral to their self-worth and definitions of place within the imperial system. Culture thus became the primary lens to negotiate the various meaning of citizenship and place in the imperial-national moment.
Date: 1907-01-01
Access: Open access
- Bowdoin College Bulletin no. 9
Date: 2003-12-01
Creator: Sean Cleary, Jennifer Taback
Access: Open access
- We show that Thompson's group F does not satisfy Cannon's almost convexity condition AC(n) for any positive integer n with respect to the standard generating set with two elements. To accomplish this, we construct a family of pairs of elements at distance n from the identity and distance 2 from each other, which are not connected by a path lying inside the n-ball of length less than k for increasingly large k. Our techniques rely upon Fordham's method for calculating the length of a word in F and upon an analysis of the generators' geometric actions on the tree pair diagrams representing elements of F. © 2003 Elsevier Inc. All rights reserved.
Date: 2012-07-01
Creator: Jack R. Bateman, Erica Larschan, Ryan D'Souza, Lauren S. Marshall, Kyle E., Dempsey, Justine E. Johnson, Barbara G. Mellone, Mitzi I. Kuroda
Access: Open access
- In Drosophila and other Dipterans, homologous chromosomes are in close contact in virtually all nuclei, a phenomenon known as somatic homolog pairing. Although homolog pairing has been recognized for over a century, relatively little is known about its regulation. We performed a genome-wide RNAibased screen that monitored the X-specific localization of the male-specific lethal (MSL) complex, and we identified 59 candidate genes whose knockdown via RNAi causes a change in the pattern of MSL staining that is consistent with a disruption of X-chromosomal homolog pairing. Using DNA fluorescent in situ hybridization (FISH), we confirmed that knockdown of 17 of these genes has a dramatic effect on pairing of the 359 bp repeat at the base of the X. Furthermore, dsRNAs targeting Pr-set7, which encodes an H4K20 methyltransferase, cause a modest disruption in somatic homolog pairing. Consistent with our results in cultured cells, a classical mutation in one of the strongest candidate genes, pebble (pbl), causes a decrease in somatic homolog pairing in developing embryos. Interestingly, many of the genes identified by our screen have known roles in diverse cell-cycle events, suggesting an important link between somatic homolog pairing and the choreography of chromosomes during the cell cycle. © 2012 Bowers et al.
Date: 1995-01-01
Creator: Mary Lou Zeeman
Access: Open access
- It is well known that for the two species autonomous competitive Lotka-Volterra model with no fixed point in the open positive quadrant, one of the species is driven to extinction, whilst the other population stabilises at its own carrying capacity. In this paper we prove a generalisation of this result to arbitrary finite dimension. That is, for the n-species autonomous competitive Lotka-Volterra model, we exhibit simple algebraic criteria on the parameters which guarantee that all but one of the species is driven to extinction, whilst the one remaining population stabilises at its own carrying capacity. © 1995 American Mathematical Society.
Date: 1917-01-01
Access: Open access
- Bowdoin College Bulletin no. 70

Date: 2020-01-01
Creator: Rebecca Berman
Access: Access restricted to the Bowdoin Community
Date: 1933-01-01
Access: Open access
- Bowdoin College Bulletin no. 207
Date: 1937-01-01
Access: Open access
- Bowdoin College Bulletin no. 234
Date: 2004-07-01
Creator: Vladimir Douhovnikoff, Adelaide M. Cheng, Richard S. Dodd
Access: Open access
- The ecology and evolutionary potential of coast redwood (Sequoia sempervirens) is significantly influenced by the important role clonal spread plays in its reproduction and site persistence. In nine second-growth stands, amplified fragment length polymorphisms (AFLPs) were used to identify redwood clonal architecture. Clones (multistem genets) dominated sites by representing an average of 70% of stems measured, ranging in size from two to 20 stems. As a result, a relatively small number of genets can monopolize a disproportionate amount of site resources, are more likely to persist over time, and have greater on-site genetic representation. Clones were not limited to fairy-ring structures, but consisted of a wide range of shapes including concentric rings, ring chains, disjunct, and linear structures. Between-ramet distances of up to 40 m were measured, indicating that clonal reproduction is not limited to basal stump resprouting. Clonal structure in second-growth stands was similar to earlier reports from old growth, emphasizing the importance of site persistence and long-term, gradual site development. Smaller ramet numbers per genet in old growth is probably due to local within-genet self thinning. Management and conservation of redwoods will benefit from a better understanding of the dynamics and structure of clonal spread in these forests.
Date: 2021-02-17
Creator: Kellen Delaney, Mengzhou Hu, Tessa Hellenbrand, Patsy S. Dickinson, Michael P., Nusbaum, Lingjun Li
Access: Open access
- The crab Cancer borealis nervous system is an important model for understanding neural circuit dynamics and modulation, but the identity of neuromodulatory substances and their influence on circuit dynamics in this system remains incomplete, particularly with respect to behavioral state-dependent modulation. Therefore, we used a multifaceted mass spectrometry (MS) method to identify neuropeptides that differentiate the unfed and fed states. Duplex stable isotope labeling revealed that the abundance of 80 of 278 identified neuropeptides was distinct in ganglia and/or neurohemal tissue from fed vs unfed animals. MS imaging revealed that an additional 7 and 11 neuropeptides exhibited altered spatial distributions in the brain and the neuroendocrine pericardial organs (POs), respectively, during these two feeding states. Furthermore, de novo sequencing yielded 69 newly identified putative neuropeptides that may influence feeding state-related neuromodulation. Two of these latter neuropeptides were determined to be upregulated in PO tissue from fed crabs, and one of these two peptides influenced heartbeat in ex vivo preparations. Overall, the results presented here identify a cohort of neuropeptides that are poised to influence feeding-related behaviors, providing valuable opportunities for future functional studies.
Date: 1971-01-01
Access: Open access
- Bowdoin College Bulletin no. 378
Date: 2010-01-01
Creator: Elizabeth A. Stemmler, Emily A. Bruns, Christopher R. Cashman, Patsy S. Dickinson, Andrew E., Christie
Access: Open access
- The PISCF-allatostatins (Manduca sexta- or C-type allatostatins) are a family of pentadecapeptides characterized by a pyroglutamine blocked N-terminus, an unamidated-PISCF C-terminus, and a disulfide bridge between two internal Cys residues. Several isoforms of PISCF-AST are known, all from holometabolous insects. Using a combination of transcriptomics and mass spectrometry, we have identified the first PISCF-type peptides from a non-insect species. In silico analysis of crustacean ESTs identified several Litopenaeus vannamei (infraorder Penaeidea) transcripts encoding putative PISCF-AST precursors. Translation of these ESTs, with subsequent prediction of their putative post-translational processing, revealed the existence of as many as three PISCF-type peptides, including pQIRYHQCYFNPISCF (disulfide bridging between Cys7 and Cys14). Although none of the predicted isoforms was detected by mass spectrometry in L. vannamei, MALDI-FTMS mass profiling identified an m/z signal corresponding to pQIRYHQCYFNPISCF (disulfide bridge present) in neural tissue from 28 other decapods, which included members of six infraorders (Stenopodidea, Astacidea, Thalassinidea, Achelata, Anomura and Brachyura). Further characterization of the peptide using SORI-CID and chemical derivatization/enzymatic digestion supported the theorized structure. In both the crab Cancer borealis and the lobster Homarus americanus, MALDI-based tissue surveys suggest that pQIRYHQCYFNPISCF is broadly distributed in the nervous system; it was also detected in the posterior midgut caecum. Collectively, our data show that members of the PISCF-AST family are not restricted to the holometabolous insects, but instead may be broadly conserved within the Pancrustacea. Moreover, our data suggest that one highly conserved PISCF-type peptide, pQIRYHQCYFN-PISCF, is present in decapod crustaceans, functioning as a brain-gut paracrine/hormone. © 2009 Elsevier Inc. All rights reserved.
Date: 2007-07-01
Creator: Patsy S. Dickinson, Jake S. Stevens, Szymon Rus, Henry R. Brennan, Christopher C., Goiney, Christine M. Smith, Lingjun Li, David W. Towle, Andrew E. Christie
Access: Open access
- In arthropods, a group of peptides possessing a -Y(SO3H)GHM/ LRFamide carboxy-terminal motif have been collectively termed the sulfakinins. Sulfakinin isoforms have been identified from numerous insect species. In contrast, members of this peptide family have thus far been isolated from just two crustaceans, the penaeid shrimp Penaeus monodon and Litopenaeus vannamei. Here, we report the identification of a cDNA encoding prepro-sulfakinin from the American lobster Homarus americanus. Two sulfakinin-like sequences were identified within the open-reading frame of the cDNA. Based on modifications predicted by peptide modeling programs, and on homology to the known isoforms of sulfakinin, particularly those from shrimp, the mature H. americanus sulfakinins were hypothesized to be pEFDEY(SO3H)GHMRFamide (Hoa-SK I) and GGGEY(SO3H)DDY(SO3H)GHLRFamide (Hoa-SK II). Hoa-SK I is identical to one of the previously identified shrimp sulfakinins, while Hoa-SK II is a novel isoform. Exogenous application of either synthetic Hoa-SK I or Hoa-SK II to the isolated lobster heart increased both the frequency and amplitude of spontaneous heart contractions. In preparations in which spontaneous contractions were irregular, both peptides increased the regularity of the heartbeat. Our study provides the first molecular characterization of a sulfakinin-encoding cDNA from a crustacean, as well as the first demonstration of bioactivity for native sulfakinins in this group of arthropods.
Date: 1952-01-01
Access: Open access
- Bowdoin College Bulletin no. 303
Date: 2019-06-01
Creator: Patsy S. Dickinson, J. Joe Hull, Alexandra Miller, Emily R. Oleisky, Andrew E., Christie
Access: Open access
- Peptides are known to contribute to central pattern generator (CPG) flexibility throughout the animal kingdom. However, the role played by receptor diversity/complement in determining this functional flexibility is not clear. The stomatogastric ganglion (STG) of the crab, Cancer borealis, contains CPGs that are models for investigating peptidergic control of rhythmic behavior. Although many Cancer peptides have been identified, their peptide receptors are largely unknown. Thus, the extent to which receptor diversity/complement contributes to modulatory flexibility in this system remains unresolved. Here, a Cancer mixed nervous system transcriptome was used to determine the peptide receptor complement for the crab nervous system as a whole. Receptors for 27 peptide families, including multiple receptors for some groups, were identified. To increase confidence in the predicted sequences, receptors for allatostatin-A, allatostatin-B, and allatostatin-C were cloned, sequenced, and expressed in an insect cell line; as expected, all three receptors trafficked to the cell membrane. RT-PCR was used to determine whether each receptor was expressed in the Cancer STG. Transcripts for 36 of the 46 identified receptors were amplified; these included at least one for each peptide family except RYamide. Finally, two peptides untested on the crab STG were assessed for their influence on its motor outputs. Myosuppressin, for which STG receptors were identified, exhibited clear modulatory effects on the motor patterns of the ganglion, while a native RYamide, for which no STG receptors were found, elicited no consistent modulatory effects. These data support receptor diversity/complement as a major contributor to the functional flexibility of CPGs.

- Embargo End Date: 2025-05-14
Date: 2020-01-01
Creator: Emma Victoria Bertke
Access: Embargoed

- Embargo End Date: 2026-05-20
Date: 2021-01-01
Creator: Anneka Florence Williams
Access: Embargoed
Date: 1958-01-01
Access: Open access
- Bowdoin College Bulletin no. 326
Date: 2013-05-01
Creator: Molly A. Kwiatkowski, Emily R. Gabranski, Kristen E. Huber, M. Christine Chapline, Andrew E., Christie, Patsy S. Dickinson
Access: Open access
- While many neurons are known to contain multiple neurotransmitters, the specific roles played by each co-transmitter within a neuron are often poorly understood. Here, we investigated the roles of the co-transmitters of the pyloric suppressor (PS) neurons, which are located in the stomatogastric nervous system (STNS) of the lobster Homarus americanus. The PS neurons are known to contain histamine; using RT-PCR, we identified a second co-transmitter as the FMRFamide-like peptide crustacean myosuppressin (Crust-MS). The modulatory effects of Crust-MS application on the gastric mill and pyloric patterns, generated in the stomatogastric ganglion (STG), closely resembled those recorded following extracellular PS neuron stimulation. To determine whether histamine plays a role in mediating the effects of the PS neurons in the STG, we bath-applied histamine receptor antagonists to the ganglion. In the presence of the antagonists, the histamine response was blocked, but Crust-MS application and PS stimulation continued to modulate the gastric and pyloric patterns, suggesting that PS effects in the STG are mediated largely by Crust-MS. PS neuron stimulation also excited the oesophageal rhythm, produced in the commissural ganglia (CoGs) of the STNS. Application of histamine, but not Crust-MS, to the CoGs mimicked this effect. Histamine receptor antagonists blocked the ability of both histamine and PS stimulation to excite the oesophageal rhythm, providing strong evidence that the PS neurons use histamine in the CoGs to exert their effects. Overall, our data suggest that the PS neurons differentially utilize their co-transmitters in spatially distinct locations to coordinate the activity of three independent networks. © 2013. Published by The Company of Biologists Ltd.
Date: 1967-01-01
Access: Open access
- Bowdoin College Bulletin no. 362
Date: 1989-01-01
Creator: B. D. Kohorn, E. M. Tobin
Access: Open access
- Proteins synthesized as soluble precursors in the cytoplasm of eukaryotic cells often cross organellar membrane barriers and then insert into lipid bilayers. One such polypeptide, the light-harvesting chlorophyll a/b-binding protein (LHCP), must also associate with pigment molecules and be assembled into the photosystem II light-harvesting complex in the chloroplast thylakoid membrane. A study of the import of mutant LHCPs into isolated chloroplasts has shown that a putative alpha-helical membrane-spanning domain near the carboxy terminus (helix 3) is essential for the stable insertion of LHCP in the thylakoid. Protease digestion experiments are consistent with the carboxy terminus of the protein being in the lumen. This report also shows that helix 3, when fused to a soluble protein, can target it to the thylakoids of isolated, intact chloroplasts. Although helix 3 is required for the insertion of LHCP and mutant derivatives into the thylakoid, the full insertion of helix 3 itself requires additionally the presence of other regions of LHCP. Thus, LHCP targeting and integration into thylakoid membranes requires a complex interaction involving a number of different domains of the LHCP polypeptide.

- Restriction End Date: 2025-06-01
Date: 2020-01-01
Creator: Emma D. Kellogg
Access: Access restricted to the Bowdoin Community
Date: 2019-06-24
Creator: Miguel Molerón, C. Chong, Alejandro J. Martínez, Mason A. Porter, P. G., Kevrekidis, Chiara Daraio
Access: Open access
- We study - experimentally, theoretically, and numerically - nonlinear excitations in lattices of magnets with long-range interactions. We examine breather solutions, which are spatially localized and periodic in time, in a chain with algebraically-decaying interactions. It was established two decades ago (Flach 1998 Phys. Rev. E 58 R4116) that lattices with long-range interactions can have breather solutions in which the spatial decay of the tails has a crossover from exponential to algebraic decay. In this article, we revisit this problem in the setting of a chain of repelling magnets with a mass defect and verify, both numerically and experimentally, the existence of breathers with such a crossover.
Date: 2014-01-01
Creator: Jaban Meher, Naomi Tanabe
Access: Open access
- Sign changes of Fourier coefficients of various modular forms have been studied. In this paper, we analyze some sign change properties of Fourier coefficients of Hilbert modular forms, under the assumption that all the coefficients are real. The quantitative results on the number of sign changes in short intervals are also discussed. © 2014 Elsevier Inc.
Date: 2014-05-01
Creator: Mara R Chin-Purcell
Access: Open access
- Central pattern generators are neuronal networks that produce reliable rhythmic motor output. A simple pattern generator, known as the cardiac ganglion (CG), controls the heart of the American lobster, Homarus americanus. Previous studies have suggested that stretch feedback relays information to the cardiac ganglion about the degree of filling in the heart, and that this feedback is mediated by stretch-sensitive dendrites extending from CG neurons. I sought to determine the mechanisms behind this stretch feedback pathway. One hundred second extension pyramids were applied to each heart while amplitude and frequency of contractions were recorded; 87% of hearts responded to stretch with a significant increase in frequency of contractions. To ascertain the role of dendrites in this feedback pathway, the accessible branches along the trunk of the CG were severed, de-afferenting the CG. In de-afferented hearts, stretch sensitivity was significantly less than in intact hearts, suggesting that the dendrites extending from the CG are essential for carrying stretch feedback information. To separate the effects of active and passive forces of heart contraction on stretch sensitivity, the CG was de-efferented by severing the motor nerves that induce muscle contraction. Hearts with only anterolateral nerves cut or with all four efferents cut were significantly less stretch sensitive than controls. These results indicate that the CG is sensitive to active stretch of each contraction. Hearts with reduced stretch feedback had more irregular frequency of contractions, indicating that a role of stretch feedback in the cardiac system may be to maintain a regular heart rate.
Date: 2009-02-01
Creator: José Burillo, Sean Cleary, Melanie Stein, Jennifer Taback
Access: Open access
- We discuss metric and combinatorial properties of Thompson's group T, including normal forms for elements and unique tree pair diagram representatives. We relate these properties to those of Thompson's group F when possible, and highlight combinatorial differences between the two groups. We define a set of unique normal forms for elements of T arising from minimal factorizations of elements into natural pieces. We show that the number of carets in a reduced representative of an element of T estimates the word length, that F is undistorted in T, and we describe how to recognize torsion elements in T. © 2008 American Mathematical Society Reverts to public domain 28 years from publication.
Date: 2013-01-01
Creator: Sarah Montross, Shu-Chin Tsui
Access: Open access
- "This brochure accompanies an exhibition of the same name at the Bowdoin College Museum of Art, Brunswick, Maine, from September 27 through December 22, 2013"--Back of cover flap
Date: 1910-01-01
Access: Open access
- Bowdoin College Bulletin no. 25
Date: 1926-01-01
Access: Open access
- Bowdoin College Bulletin no. 149
Date: 1924-01-01
Access: Open access
- Bowdoin College Bulletin no. 131
Date: 1951-01-01
Access: Open access
- Bowdoin College Bulletin no. 299