Showing 1951 - 2000 of 5831 Items

Date: 2013-05-07

Creator: Yao Tang, Haifang Huang

Access: Open access

We estimate the effects of real exchange rate movements on employment in US cities between 2003 and 2010. We explore the differences in the composition of local industries to construct city-specific changes in exchange rates and estimate their effects on local employment in manufacturing industries and in nonmanufacturing industries. Controlling for year and city fixed effects, we find that a depreciation of the US dollar increased local employment in the manufacturing industries, our proxy for the tradable sector. The depreciation also increased employment in the nonmanufacturing industries, the nontradable sector. Furthermore, the effects on nonmanufacturing employment were stronger in cities that had a higher fraction of manufacturing employment, indicating the exchange rate movements’ indirect effects through the manufacturing industries. We also consider an alternative definition of the tradable sector that is broadened to include five service industries. The findings are similar.

Date: 2013-04-12

Creator: Alex Primo

Access: Open access

This article discusses how interactions in organizational blogs participate in the emergence of the organization itself. Based on the principles of The Montreal School of organizational communication, the paper reflects on how the recursive relationship between texts and conversations in blogs, according to their affordances, mobilizes the organization and contributes to its continuing creation. In order to conduct this argument, the concept of social media, uses of organizational blogs and the main contributions of The Montreal School are analyzed. Finally, this article demonstrates how blogs contribute to the definition of the organization. Beyond their promotional potential, the blog’ role as co-creator of the organization is highlighted.

Date: 2019-11-01

Creator: Alberto Bellido, Toni Ciudad, Belén Hermosa, Encarnación Andaluz, Anja, Forche, Germán Larriba

Access: Open access

Candida albicans, the most common fungal pathogen, is a diploid with a genome that is rich in repeats and has high levels of heterozygosity. To study the role of different recombination pathways on direct-repeat recombination, we replaced either allele of the RAD52 gene (Chr6) with the URA-blaster cassette (hisG-URA3-hisG), measured rates of URA3 loss as resistance to 5-fluoroorotic acid (5FOAR) and used CHEF Southern hybridization and SNP-RFLP analysis to identify recombination mechanisms and their frequency in wildtype and recombination mutants. FOAR rates varied little across different strain backgrounds. In contrast, the type and frequency of mechanisms underlying direct repeat recombination varied greatly. For example, wildtype, rad59 and lig4 strains all displayed a bias for URA3 loss via pop-out/deletion vs. inter-homolog recombination and this bias was reduced in rad51 mutants. In addition, in rad51-derived 5FOAR strains direct repeat recombination was associated with ectopic translocation (5%), chromosome loss/truncation (14%) and inter-homolog recombination (6%). In the absence of RAD52, URA3 loss was mostly due to chromosome loss and truncation (80–90%), and the bias of retained allele frequency points to the presence of a recessive lethal allele on Chr6B. However, a few single-strand annealing (SSA)-like events were identified and these were independent of either Rad59 or Lig4. Finally, the specific sizes of Chr6 truncations suggest that the inserted URA-blaster could represent a fragile site.

Date: 2016-12-16

Creator: Emily L. Clark, Madhu Emmadi, Katharine L. Krupp, Ananda R. Podilapu, Jennifer D., Helble, Suvarn S. Kulkarni, Danielle H. Dube

Access: Open access

Bacterial glycans contain rare, exclusively bacterial monosaccharides that are frequently linked to pathogenesis and essentially absent from human cells. Therefore, bacterial glycans are intriguing molecular targets. However, systematic discovery of bacterial glycoproteins is hampered by the presence of rare deoxy amino sugars, which are refractory to traditional glycan-binding reagents. Thus, the development of chemical tools that label bacterial glycans is a crucial step toward discovering and targeting these biomolecules. Here, we explore the extent to which metabolic glycan labeling facilitates the studying and targeting of glycoproteins in a range of pathogenic and symbiotic bacterial strains. We began with an azide-containing analog of the naturally abundant monosaccharide N-acetylglucosamine and discovered that it is not broadly incorporated into bacterial glycans, thus revealing a need for additional azidosugar substrates to broaden the utility of metabolic glycan labeling in bacteria. Therefore, we designed and synthesized analogs of the rare deoxy amino d-sugars N-acetylfucosamine, bacillosamine, and 2,4-diacetamido-2,4,6-trideoxygalactose and established that these analogs are differentially incorporated into glycan-containing structures in a range of pathogenic and symbiotic bacterial species. Further application of these analogs will refine our knowledge of the glycan repertoire in diverse bacteria and may find utility in treating a variety of infectious diseases with selectivity.

Date: 2016-05-05

Creator: C. Chong, E. Kim, E. G. Charalampidis, H. Kim, F., Li, P. G. Kevrekidis

Access: Open access

This article explores the excitation of different vibrational states in a spatially extended dynamical system through theory and experiment. As a prototypical example, we consider a one-dimensional packing of spherical particles (a so-called granular chain) that is subject to harmonic boundary excitation. The combination of the multimodal nature of the system and the strong coupling between the particles due to the nonlinear Hertzian contact force leads to broad regions in frequency where different vibrational states are possible. In certain parametric regions, we demonstrate that the nonlinear Schrödinger equation predicts the corresponding modes fairly well. The electromechanical model we apply predicts accurately the conversion from the obtained mechanical energy to the electrical energy observed in experiments.

Date: 2016-06-13

Creator: Neel Nadkarni, Andres F. Arrieta, Christopher Chong, Dennis M. Kochmann, Chiara, Daraio

Access: Open access

We present a model system for strongly nonlinear transition waves generated in a periodic lattice of bistable members connected by magnetic links. The asymmetry of the on-site energy wells created by the bistable members produces a mechanical diode that supports only unidirectional transition wave propagation with constant wave velocity. We theoretically justify the cause of the unidirectionality of the transition wave and confirm these predictions by experiments and simulations. We further identify how the wave velocity and profile are uniquely linked to the double-well energy landscape, which serves as a blueprint for transition wave control.

Date: 2007-01-01

Creator: Laura Fecych Sprague

Access: Open access

Catalog of an exhibition held at the Bowdoin College Museum of Art Oct. 14, 2007 to August 24, 2008 to celebrate the Walker Art Building's renovation and expansion by architects Machado and Silvetti, Boston.

Date: 2019-11-10

Creator: Paolo Di Vecchia, Andrés Luna, Stephen G. Naculich, Rodolfo Russo, Gabriele, Veneziano, Chris D. White

Access: Open access

The structure of scattering amplitudes in supergravity theories continues to be of interest. Recently, the amplitude for 2→2 scattering in N=8 supergravity was presented at three-loop order for the first time. The result can be written in terms of an exponentiated one-loop contribution, modulo a remainder function which is free of infrared singularities, but contains leading terms in the high energy Regge limit. We explain the origin of these terms from a well-known, unitarity-restoring exponentiation of the high-energy gravitational S-matrix in impact-parameter space. Furthermore, we predict the existence of similar terms in the remainder function at all higher loop orders. Our results provide a non-trivial cross-check of the recent three-loop calculation, and a necessary consistency constraint for any future calculation at higher loops.

Date: 2016-10-01

Creator: Thomas G. Huntington, William M. Balch, George R. Aiken, Justin Sheffield, Lifeng, Luo, Collin S. Roesler, Philip Camill

Access: Open access

Ongoing climate change is affecting the concentration, export (flux), and timing of dissolved organic carbon (DOC) exported to the Gulf of Maine (GoM) through changes in hydrologic regime. DOC export was calculated for water years 1950 through 2013 for 20 rivers and for water years 1930 through 2013 for 14 rivers draining to the GoM. DOC export was also estimated for the 21st century based on climate and hydrologic modeling in a previously published study. DOC export was calculated by using the regression model LOADEST to fit seasonally adjusted concentration discharge (C-Q) relations. Our results are an analysis of the sensitivity of DOC export to changes in hydrologic conditions over time since land cover and vegetation were held constant over time. Despite large interannual variability, all rivers had increasing DOC export during winter and these trends were significant (p < 0.05) in 10 out of 20 rivers for 1950 to 2013 and in 13 out of 14 rivers for 1930 to 2013. All rivers also had increasing annual export of DOC although fewer trends were statistically significant than for winter export. Projections for DOC export during the 21st century were variable depending on the climate model and greenhouse gas emission scenario that affected future river discharge through effects on precipitation and evapotranspiration. The most consistent result was a significant increase in DOC export in winter in all model-by-emission scenarios. DOC export was projected to decrease during the summer in all model-by-emission scenarios, with statistically significant decreases in half of the scenarios.

Date: 2009-11-03

Creator: Angus S King

Access: Audio recording permanently restricted

Biographial Note

Angus Stanley King, Jr. was born March 31, 1944, in Virginia. His father, Stanley King, was a lawyer in Alexandria and worked as U.S. commissioner and federal magistrate. Angus was active in the civil rights movement, especially in regard to schooling. He was graduated from Dartmouth in 1966 and received his law degree from the University of Virginia in 1969. He worked as a legislative assistant to Senator William D. Hathaway on education, labor, and transportation policy before entering private law practice in Brunswick, Maine, from 1975 to 1983. He hosted the public broadcasting television program Maine Watch, a public affairs talk show. In 1989, he started Northeast Energy Management to run electrical energy conservation projects throughout Maine. As an Independent, he served as governor of Maine from 1994 to 2002; and at the time of this interview he was a lecturer at Bowdoin College in addition to pursuing business interests.

Summary

Interview includes discussion of: family and educational background; working at Pine Tree Legal in Skowhegan, Maine; King’s parents and their political leanings; King’s recollections of the Civil Rights movement; working for Senator Hathaway; U.S. Senate campaign (1972); Senator Hathaway’s relationship with Senator Muskie; meeting George Mitchell while he was involved in public broadcasting; Mitchell and the first Gulf War; King’s work on energy management; King’s decision to run as an Independent; Maine gubernatorial campaign (1994); and Mitchell’s legacy.

Date: 1994-01-01

Access: Open access

Date: 2014-08-01

Creator: Tricia Hartley

Access: Open access

In many animals, there are groups of neurons, known as central pattern generators (CPGs), which are capable of controlling major everyday life functions. CPGs are responsible for functions that require patterned rhythmic activity, such as the heartbeat, digestion and locomotion. A CPG called the cardiac ganglion, consisting of only nine neurons, controls the rhythmic beating of the heart of the American lobster, Homarus americanus, by stimulating the muscle cells of the heart.My summer consisted of two separate projects in Patsy Dickinson’s neurophysiology lab, both studying the interaction of the cardiac ganglion with neuropeptides. These neuropeptides, GYSDRNYLRFamide (GYS) and SGRNFLRFamide (SGRN) are released hormonally into the cardiac neuromuscular system. The overarching goal of both projects was to determine the role of these neuropeptides in the lobster’s cardiac neuromuscular system.For my first project, I studied the interaction of the neuropeptide GYS with the stretch receptors of the lobster heart. Previous research has found these stretch receptors to be a form of excitatory feedback from the lobster heart to the cardiac ganglion, as heartbeat amplitude and frequency increase as heart is stretched. Further, the dendrites along the cardiac ganglion have been found to be stretch-sensitive, meaning when these dendrites were cut, this excitatory response is no longer observed. By stretching the heart with the dendrites intact and with GYS and next when the dendrites were cut and with GYS, the goal of this project was to determine if GYS would alter the feedback of the stretch receptors back to the cardiac ganglion to change heartbeat frequency and amplitude. Unfortunately, the intricacy involved in being able to cut the dendrites while allowing the heart to continue to beat proved very difficult and I moved on to my next project.The goal of my next project was to examine the interactions of the neuropeptides GYS and SGRN with the decreased and increased presence of nitric oxide, the second form of feedback from the heart muscle to the cardiac ganglion. Previous research shows nitric oxide as having an inhibitory effect, decreasing heartbeat amplitude and frequency. By applying both GYS and SGRN to both the isolated cardiac ganglion and the whole heart in the presence of both a nitric oxide inhibitor and donor, the hope is to be able to determine the interaction of these peptides with and without the presence of the feedback of nitric oxide. Because I started this project later in the summer, with the assistance of Sophie Janes’ data, I have been able to look at the effects of GYS on the whole heart, in addition to the combination of GYS with L-NA, a nitric oxide inhibitor. So far, the data has shown that the combination of GYS with L-NA causes less of a decrease in heartbeat frequency than GYS alone, which shows a significant decrease. We predict this is because GYS enhances the nitric oxide pathway, while L-NA is blocking the nitric oxide pathway, thus giving insight into the role of GYS within the lobster’s cardiac neuromuscular system. For my senior independent study I hope to continue this research and be able to continue to compile data for both SGRN and GYS on the isolated cardiac ganglion as well as on the whole heart, with a nitric oxide inhibitor and donor. Final Report of research funded by a Doherty Coastal Studies Research Fellowship.

Date: 2001-01-01

Access: Open access

Date: 2006-04-01

Creator: Alix Coste, Vincent Turner, Françoise Ischer, Joachim Morschhäuser, Anja, Forche, Anna Selmecki, Judith Berman, Jacques Bille, Dominique Sanglard

Access: Open access

TAC1, a Candida albicans transcription factor situated near the mating-type locus on chromosome 5, is necessary for the upregulation of the ABC-transporter genes CDR1 and CDR2, which mediate azole resistance. We showed previously the existence of both wild-type and hyperactive TAC1 alleles. Wild-type alleles mediate upregulation of CDR1 and CDR2 upon exposure to inducers such as fluphenazine, while hyperactive alleles result in constitutive high expression of CDR1 and CDR2. Here we recovered TAC1 alleles from two pairs of matched azole-susceptible (DSY294; FH1: heterozygous at mating-type locus) and azole-resistant isolates (DSY296; FH3: homozygous at mating-type locus). Two different TAC1 wild-type alleles were recovered from DSY294 (TAC1-3 and TAC1-4) while a single hyperactive allele (TAC1-5) was isolated from DSY296. A single amino acid (aa) difference between TAC1-4 and TAC1-5 (Asn977 to Asp or N977D) was observed in a region corresponding to the predicted activation domain of Tac1p. Two TAC1 alleles were recovered from FH1 (TAC1-6 and TAC1-7) and a single hyperactive allele (TAC1-7) was recovered from FH3. The N977D change was seen in TAC1-7 in addition to several other aa differences. The importance of N977D in conferring hyperactivity to TAC1 was confirmed by site-directed mutagenesis. Both hyperactive alleles TAC1-5 and TAC1-7 were codominant with wild-type alleles and conferred hyperactive phenotypes only when homozygous. The mechanisms by which hyperactive alleles become homozygous was addressed by comparative genome hybridization and single nucleotide polymorphism arrays and indicated that loss of TAC1 heterozygosity can occur by recombination between portions of chromosome 5 or by chromosome 5 duplication. Copyright © 2006 by the Genetics Society of America.

Date: 1999-01-01

Access: Open access

Date: 2020-02-11

Creator: Elizabeth A. Hoge, Hannah E. Reese, Isabelle A. Oliva, Caroline D. Gabriel, Brittany M., Guidos, Eric Bui, Naomi M. Simon, Mary Ann Dutton

Access: Open access

Although mindfulness-based interventions (MBIs) have garnered empirical support for a wide range of psychological conditions, the psychological processes that mediate the relationship between MBIs and subsequent symptomatic improvement are less well-understood. In the present study we sought to examine, for the first time, the relationship between mindfulness, negative interpretation bias as measured by the homophone task, and anxiety among adults with Generalized Anxiety Disorder (GAD). Forty-two individuals with GAD completed measures of mindfulness, interpretation bias, and anxiety before and after treatment with Mindfulness-based Stress Reduction (MBSR). Contrary to prior research, we did not find evidence of an indirect relationship between baseline levels of mindfulness and anxiety via negative interpretation bias. MBSR did result in significant reductions in negative interpretation bias from baseline to post-treatment; however, we did not find evidence of an indirect relationship between changes in mindfulness and changes in anxiety via changes in interpretation bias. Taken together, these results provide minimal support for the hypothesized relationship between mindfulness, negative interpretation bias, and anxiety among adults with GAD. Limitations and specific suggestions for further inquiry are discussed.

Date: 2005-01-01

Creator: Anja Forche, Georgiana May, P. T. Magee

Access: Open access

Candida albicans is a diploid yeast with a predominantly clonal mode of reproduction, and no complete sexual cycle is known. As a commensal organism, it inhabits a variety of niches in humans. It becomes an opportunistic pathogen in immunocompromised patients and can cause both superficial and disseminated infections. It has been demonstrated that genome rearrangement and genetic variation in isolates of C. albicans are quite common. One possible mechanism for generating genome-level variation among individuals of this primarily clonal fungus is mutation and mitotic recombination leading to loss of heterozygosity (LOH). Taking advantage of a recently published genome-wide single-nucleotide polymorphism (SNP) map (A. Forche, P. T. Magee, B. B. Magee, and G. May, Eukaryot. Cell 3:705-714, 2004), an SNP microarray was developed for 23 SNP loci residing on chromosomes 5, 6, and 7. It was used to examine 21 strains previously shown to have undergone mitotic recombination at the GAL1 locus on chromosome 1 during infection in mice. In addition, karyotypes and morphological properties of these strains were evaluated. Our results show that during in vivo passaging, LOH events occur at observable frequencies, that such mitotic recombination events occur independently in different loci across the genome, and that changes in karyotypes and alterations of phenotypic characteristics can be observed alone, in combination, or together with LOH.

Date: 2010-06-01

Creator: Erika Nyhus, Tim Curran

Access: Open access

The primary aim of this review is to examine evidence for a functional role of gamma and theta oscillations in human episodic memory. It is proposed here that gamma and theta oscillations allow for the transient interaction between cortical structures and the hippocampus for the encoding and retrieval of episodic memories as described by the hippocampal memory indexing theory (Teyler and DiScenna, 1986). Gamma rhythms can act in the cortex to bind perceptual features and in the hippocampus to bind the rich perceptual and contextual information from diverse brain regions into episodic representations. Theta oscillations act to temporally order these individual episodic memory representations. Through feedback projections from the hippocampus to the cortex these gamma and theta patterns could cause the reinstatement of the entire episodic memory representation in the cortex. In addition, theta oscillations could allow for top-down control from the frontal cortex to the hippocampus modulating the encoding and retrieval of episodic memories. © 2009.

Date: 2000-05-01

Creator: Michael M. Franz

Access: Open access

Interest groups now play a prominent role in the air war. Their collective investment in election campaigns has skyrocketed in the aftermath of Citizens United. Yet questions remain about whether interest group advertising affects the content of the specific issues being discussed. Do groups enter campaigns and engage voters on the same issues as their candidate allies? Or does the presence of more advertisers introduce competitive issue streams? This paper examines ad buys in Senate elections between 2008 and 2014 and the presidential elections of 2008 and 2012. A primary goal of the paper is to uncover the effect of high and low levels of "issue convergence" on election outcomes. Strategists often express concern that too many voices on behalf of a candidate can weaken the impact of ads. One might expect that as convergence between a candidate and his or her allies goes up (meaning the issue content of the ad buys overlaps across advertisers), the impact of ads on votes will increase. Ad effects should be weaker when a candidate's ads discuss different issues from allied groups and party committees. The results, however, suggest that high rates of issue convergence are only weakly related to election outcomes (and not always in consistent ways).

Date: 2021-01-01

Creator: Emily M. Peterman, Michael J. Jercinovic, Rachel J. Beane, Cameron B. de Wet

Access: Open access

Cathodoluminescence (CL) images of kyanite reveal several internal textures, including sector zoning, oscillatory zoning, and cross-cutting relationships among different domains. Many textures observed in kyanite correspond to discrete events, thereby connecting kyanite textures to the pressure–temperature (P–T) history of the rock. To evaluate the record of metamorphism preserved by kyanite, metapelites were selected from three different orogens that reflect P–T conditions ranging from amphibolite to ultrahigh-pressure (UHP) facies. Cross-correlation of variations in CL intensity, chemistry, and crystal orientation within kyanite indicate the following findings. First, the preservation of original growth zones in kyanite from poly-metamorphic rocks demonstrates that growth zoning in kyanite persists through metamorphic events and is not erased by diffusion or complete recrystallization. In some samples, kyanite retains evidence of its reaction history during growth. Second, measured changes in absolute crystallographic orientation do not correspond with changes in CL intensity in any of the measured samples, including kyanite twins. Third, both kink banding and undulatory extinction are present across all samples, consistent with rotation about in the (100)[001] slip system. Kyanite from (U)HP samples exhibits higher amplitude undulations than kyanite from lower-grade lithologies, suggesting that crystallographic orientation data may provide complementary insight about deformation along the P–T path. Fourth, specific CL and trace element signatures in kyanite can be correlated with discrete metamorphic histories; yet, CL intensity and colour are affected by multiple elements, not a single controlling element. In sum, multiple generations of kyanite can be identified by careful cross-correlation of CL and geochemical data, and when combined with crystal orientation data, kyanite provides a robust record of a rock's P–T evolution.

Date: 2018-07-01

Creator: Danielle H. Dube

Access: Open access

“Drug Discovery” is a 13-week lecture and laboratory-based course that was developed to introduce non-science majors to foundational chemistry and biochemistry concepts as they relate to the unifying theme of drug discovery. The first part of this course strives to build students' understanding of molecules, their properties, the differences that enable them to be separated from one another, and their abilities to bind to biological receptors and elicit physiological effects. After building students' molecular worldview, the course then focuses on four classes of drugs: antimicrobials, drugs that affect the mind, steroid-based drugs, and anti-cancer drugs. During each of these modules, an emphasis is placed on how understanding the basis of disease and molecular-level interactions empowers us to identify novel medicinal compounds. Periodic in class discussions based on articles pertinent to class topics ranging from the spread of antibiotic resistance, to the molecular basis of addiction, to rational drug design, are held to enable students to relate course material to pressing problems of national and daily concern. In addition to class time, weekly inquiry-based laboratories allow students to critically analyze data related to course concepts, and later in the semester give students an opportunity to design and implement their own experiments to screen for antimicrobial activity. This course provides students with an understanding of the importance of chemistry and biochemistry to human health while emphasizing the process, strategies, and challenges related to drug discovery. © 2018 by The International Union of Biochemistry and Molecular Biology, 46:327–335, 2018.

Date: 2015-03-01

Creator: Aidan W. Short, David B. Carlon

Access: Open access

A new wave of green crabs Carcinus maenus is sweeping through the Gulf of Maine (GOM). While first reports of green crabs in the GOM date from the early 1900s, populations in southern GOM have exploded in the last five years. In the Casco Bay region, this unusually high abundance is associated with poor commercial shellfish landings and the decline of eel grass habitat (Zostera marina). To determine the mechanistic roles green crabs play in direct and indirect ecological interactions, it is important to understand diet breadth, and how feeding preferences change in response to ecological context. Since green crabs are omnivorous, traditional approaches to diet analysis via hard parts suffer from substantial bias. We are using DNA barcoding and next generation sequencing (NGS) to analyze green crab diets from a longitudinal sampling design in Casco Bay. In addition to a temporal dimension, our design includes two habitats: clam flats and eel grass beds. We have now sampled ~ 1000 crabs and have processed 460 individual stomachs from a range of sizes and both sexes. Here we will present: our sampling design, our NGS pipeline, and preliminary analysis from a lobster-specific (Homarus americanus) probe. Presenting author status: Undergraduate Preferred presentation type: Poster Preferred topics: 3. Biological invasions; 18. Molecular ecology Benthic Ecology Meeting, 2015 Quebec City, Canada Aidan Short was an undergraduate student at Bowdoin College when this research was conducted.

Date: 2016-04-15

Creator: Michèle LaVigne, Andréa G. Grottoli, James E. Palardy, Robert M. Sherrell

Access: Open access

The coral skeleton barium to calcium ratio (Ba/Ca ), a proxy for seawater barium concentrations (Ba ), has been interpreted as a tracer of upwelling based on the characteristic "nutrient like" depth profile of Ba . However, in some tropical regions, such as the Gulf of Panamá, substantial influence of terrestrial runoff inputs and differences between the vertical distribution of Ba and that of the major nutrients (nitrate and phosphate) in the upper water column can complicate the interpretation of Ba/Ca as an upwelled nutrient proxy. In the Gulf of Panamá, contemporaneous Ba/Ca records from multiple colonies of Porites lobata, Pavona gigantea, and Pavona clavus corals record a nearly twofold change in surface water Ba as a 20-70% increase in skeletal Ba/Ca with excellent correlation among Ba/Ca records from co-located colonies (r = 0.86-0.99). These results provide, for the first time, an absolute calibration of the coral Ba proxy with a contemporaneous Ba record. Compiling the Ba/Ca records from three co-located colonies of each species into taxon-specific composite regressions reveals strong statistically significant correlations with the Ba time-series record (p < 0.001). Differences among taxa in regression slope, y-intercept, and average distribution coefficient, as well as a demonstration of the application of the P. clavus calibration to a previously published Ba/Ca record, emphasize the necessity of using taxon-specific calibrations to reconstruct changes in Ba with accuracy. These results support the application of Ba/Ca to reconstruct past changes in absolute Ba concentrations, adding an important tool to the collection of geochemical proxies for reconstructing surface ocean biogeochemical processes in the past. coral SW SW SW coral coral SW SW coral SW coral SW coral SW

Date: 1960-01-01

Creator: Kevin Herbert

Access: Open access

Bulletin / Bowdoin College ; no. 335

Date: 2019-01-01

Creator: Sadie LoGerfo-Olsen

Access: Access restricted to the Bowdoin Community

Date: 2018-05-01

Creator: Ethan Barkalow

Access: Access restricted to the Bowdoin Community

Date: 2021-01-01

Creator: Luv Kataria

Access: Open access

This is a response to the Documenting Bowdoin & COVID-19 Reflections Questionnaire. The questionnaire was created in March 2021 by staff of Bowdoin's George J. Mitchell Department of Special Collections & Archives. The author is from the class of 2024.

Date: 2014-08-01

Creator: Jack Mitchell

Access: Open access

DNA Barcoding is the identification of organisms through the use of a standardized portion of the genome, a concept first suggested by Hebert, et al (2003) and since developed to include standard databases and many campaigns internationally to identify and barcode all species in the world. Because DNA barcoding uses molecular data, rather than morphology, to identify organisms, it allows for the identification of organisms that are morphologically similar or have been processed to the point of unrecognizability. Barcoding has the potential to streamline and enhance conservation efforts drastically. Its "quick and easy" identification process allows better fisheries management, market regulation to ensure vendors are selling what they say they're selling (no more horsemeat burgers or dolphin sushi), and greater enforcement of regulations against the killing and selling of endangered animal products (Minhos et al., 2013). In my work this summer, I've been using DNA barcoding to examine the dynamics of a community of larval fish off the coast of Oahu through a seven-year longitudinal barcoding study. Fish larvae are very hard to identify morphologically because they lack obvious identifying characteristics. For this reason, barcoding is essential for accurately understanding the community structure of such fish. In my work, I analyze a set of sequences from the 5-prime region of the mitochondrial gene cytochrome oxidase subunit 1, widely used as a barcode in the animal kingdom, gathered from fish larvae collected off the coast of Oahu by the University of Hawaii Manoa Biology 301L class. The sampling consisted of a series of oblique plankton tows taken at three depths (5m, 25m, and 50m) between January and April every year from 2007 to 2013. During this period, a total of 833 fish larvae were sampled and sequenced. Using the Barcode of Life Data Systems (BOLD Systems) Identification Engine, I was able to identify 78% of all specimens to family-level or better, representing about 25% of the 202 families of shore fishes known to occur in Hawaiian coastal waters. The data stratification consisted of 7 years, each with three depths and 56 family groups, a 21 by 56 data matrix. In order to see the patterns of the matrix, I used Principal Components Analysis, a form of ordination, which distills multidimensional data to a form that is more easily visualized. This ordination revealed that 2009 and 2011 had highly anomalous community structure in which there were large increases in abundance (greater than three (3) Standard Deviations from the mean) of 12 family groups in each year, indicating concerted change in the structure of ichythoplankton in those years, though the families may be represented by a low number of specimens in the sample. Because these families had little to no representation in other years, we are able to rule out the possibility of results being skewed by a couple of families that showed up in our nets by chance that don't reflect the actual community structure. In these years, the highly anomalous families did not overlap, indicating that the factors causing the anomalies were non-identical. In 2009 there were eight families that deviated from the mean by over four (4) Standard Deviations, and in 2011 there were ten. Though the biggest groups of deviant families in both years were reef fish and mesopelagic fish, tropical habitat ranged from shallow water benthic (sea-bed) fish such as Ophichthidae, to bathypelagic (deep sea) fish such as the anglerfish family Ceratiidae. In my last few weeks working on this project I am exploring what environmental factors may have had a hand in such anomalies. El Niño cycles may have had a hand, as there was a weak La Niña (slightly cooler waters) anomaly leading into 2009, and a very strong La Niña (drastically cooler waters) anomaly leading into 2011 ("Cold and Warm Episodes by Season," 2014). The differences in community structure I detected had different signs, that is the co-variance of fish families was different for each of these years. This suggests that water temperature itself may not be causing these ecological patterns. A more likely hypothesis links the effects of El Niño/La Niña on oceanographic circulation throughout the Pacific and even near-shore in the Hawaiian Islands. These changes can drive differences in the delivery of larvae to the islands, as well as advection away from the islands. Further research in the remainder of the summer will attempt to gather more information on what may have caused the community structure anomalies. Final Report of research funded by Mary Lou Zeeman’s NSF grant - Computational Sustainability (NSF-CCF-0832788).

Date: 1827-10-01

Access: Open access

Date: 2021-12-01

Creator: Lea Takács, Samuel P. Putnam, Catherine Monk, Hannah G. Dahlen, Charlene, Thornton, František Bartoš, Anastasia Topalidou, Lilian L. Peters

Access: Open access

The aim of this prospective longitudinal study was to examine the association between Cesarean section (CS) and child development and behavior. The sample consisted of 256 children who were born at term without serious perinatal pathologies. Their development and behavior was assessed at the age of four using Ages and Stages Questionnaire (ASQ-3), Children’s Behavior Questionnaire and Strength and Difficulties Questionnaire. Multivariate linear regression analyses were conducted to assess the association between CS and child outcomes. CS was associated with better scores in the Problem Solving domain of the ASQ in the whole sample. After stratifying by child sex, the positive association between CS and the Problem Solving domain was significant in boys, while no association was found in girls. Girls were rated less optimally in the Gross Motor domain of the ASQ when born via CS. Mode of birth was not associated with behavioral outcomes.

Date: 2009-06-04

Creator: Geraldine Butler, Matthew D. Rasmussen, Michael F. Lin, Manuel A.S. Santos, Sharadha, Sakthikumar, Carol A. Munro, Esther Rheinbay, Manfred Grabherr, Anja Forche, Jennifer L. Reedy, Ino Agrafioti, Martha B. Arnaud, Steven Bates, Alistair J.P. Brown, Sascha Brunke, Maria C. Costanzo, David A. Fitzpatrick, Piet W.J. De Groot, David Harris, Lois L. Hoyer, Bernhard Hube, Frans M. Klis, Chinnappa Kodira, Nicola Lennard, Mary E. Logue, Ronny Martin, Aaron M. Neiman, Elissavet Nikolaou, Michael A. Quail, Janet Quinn, Maria C. Santos

Access: Open access

Candida species are the most common cause of opportunistic fungal infection worldwide. Here we report the genome sequences of six Candida species and compare these and related pathogens and non-pathogens. There are significant expansions of cell wall, secreted and transporter gene families in pathogenic species, suggesting adaptations associated with virulence. Large genomic tracts are homozygous in three diploid species, possibly resulting from recent recombination events. Surprisingly, key components of the mating and meiosis pathways are missing from several species. These include major differences at the mating-type loci (MTL); Lodderomyces elongisporus lacks MTL, and components of the a1/α2 cell identity determinant were lost in other species, raising questions about how mating and cell types are controlled. Analysis of the CUG leucine-to-serine genetic-code change reveals that 99% of ancestral CUG codons were erased and new ones arose elsewhere. Lastly, we revise the Candida albicans gene catalogue, identifying many new genes. © 2009 Macmillan Publishers Limited. All rights reserved.

Date: 2021-06-01

Creator: Lea Takács, Jiří Štipl, Maria Gartstein, Samuel P. Putnam, Catherine, Monk

Access: Open access

Objective: Exposure to stress in pregnancy has been shown to affect fetal development with short- and long-term physiological and behavioral consequences for the offspring. Although social support is known to lower perceived stress, no prior study has investigated the buffering role of social support in the context of prenatal stress effects on infant temperament. The aim of this study was to examine interactive effects of prenatal stress and social support on several dimensions of infant temperament at 9 months postpartum. Study design: A total of 272 mothers completed the Perceived Stress Scale and the Perceived Social Support Scale in the 3rd trimester of pregnancy. Infant temperament was assessed by mothers at 9 months postpartum using the Infant Characteristics Questionnaire. Linear regression models were performed to assess the effects of perceived stress, social support, and their interaction on infant temperament. Results: Prenatal stress interacted with social support, such that prenatal stress increased infant unpredictability when social support was below -0.5 SD. Conclusions: Prenatal stress was found to be a risk factor for infant temperamental unpredictability when combined with low social support perceived by the mother during pregnancy. Support of others, not previously examined in this context, can reduce the impact of prenatal stress.

Date: 1893-01-01

Access: Open access

Date: 1993-01-01

Creator: A. S. Johnson, K. P. Sebens

Access: Open access

Per polyp feeding rate was independent of the horizontal planform area of colonies. At the lowest velocities, most particles were captured on the upstream edge or in the middle of colonies, but all positional bias in capture rate disappeared at higher velocities. Particle capture and increasing flow speed were negatively associated. There were small, but measurable, differences in mean tentacle length between corals feeding at different velocities. Velocity-dependent feeding rate at most velocities was thus related to changes in flow rather than to changes in feeding behavior. Experiments in which corals were turned upside down revealed that the increased capture rate for rightside-up corals feeding at low velocity could be almost entirely accounted for by gravitational deposition of particles on the corals' tentacles. The tentacles form a canopy within which water movement was slowed, possibly facilitating gravitational deposition of non-buoyant or sinking food particles. -from Authors

Date: 2015-01-01

Creator: Michael J. Frank, Chris Gagne, Erika Nyhus, Sean Masters, Thomas V., Wiecki, James F. Cavanagh, David Badre

Access: Open access

What are the neural dynamics of choice processes during reinforcement learning? Two largely separate literatures have examined dynamics of reinforcement learning (RL) as a function of experience but assuming a static choice process, or conversely, the dynamics of choice processes in decision making but based on static decision values. Here we show that human choice processes during RL are well described by a drift diffusion model (DDM) of decision making in which the learned trial-by-trial reward values are sequentially sampled, with a choice made when the value signal crosses a decision threshold. Moreover, simultaneous fMRI and EEG recordings revealed that this decision threshold is not fixed across trials but varies as a function of activity in the subthalamic nucleus (STN) and is further modulated by trial-by-trial measures of decision conflict and activity in the dorsomedial frontal cortex (pre-SMABOLDand mediofrontal theta in EEG). These findings provide converging multimodal evidence for a model in which decision threshold in reward-based tasks is adjusted as a function of communication from pre-SMA to STN when choices differ subtly in reward values, allowing more time to choose the statistically more rewarding option.

Date: 2009-12-01

Creator: Matthew Horak, Melanie Stein, Jennifer Taback

Access: Open access

We introduce a new method for computing the word length of an element of Thompson's group F with respect to a "consecutive" generating set of the form Xn = {x0,x1, ⋯, xn}, which is a subset of the standard infinite generating set for F. We use this method to show that (F, Xn) is not almost convex, and has pockets of increasing, though bounded, depth dependent on n. © 2009 World Scientific Publishing Company.

Date: 1902-01-01

Access: Open access

Date: 2011-01-01

Creator: Diana K. Tuite

Access: Open access

Catalogue of an exhibition held at the Bowdoin College Museum of Art Oct. 28, 2011 through January 29, 2012. Essay entitled: Signs of the city / by Diana Tuite.

Date: 1904-01-01

Access: Open access

Date: 2020-01-01

Creator: Michael Harris

Access: Open access

A significant market share of modern plastics is held by long-chain hydrocarbon polymers, such as polyethylene and polypropylene, properties of which can be dramatically changed by addition of linear α-olefins. Production of linear α-olefins involves the creation of many unwanted byproducts, representing significant quantities of both economic and ecological waste. While catalysts have been designed to selectively produce industrially useful olefins, these catalysts often encounter challenges such as synthesis of other unwanted byproducts, slow reaction times, and difficulty of synthesis. Based on one such prior catalyst, we report here synthetic work towards a cobalt catalyst with a constrained N-heterocyclic carbene supporting ligand predicted to allow for more favorable product distributions. Synthesis of two precursors to a sterically unhindered N-heterocyclic carbene, as well as development of a synthetic protocol for the coordination of N,N’- dimethylimidazolium-2-carboxylate to Cp*Co(ethene)2 was completed. Activation of the precatalyst and preliminary catalytic experiments were performed, though abbreviated research periods made complete analysis impossible. Finally, we report evidence of the formation of a novel cobalt-NHC dimer as a temperature controlled byproduct of the desired catalyst synthesis.

Date: 2006-09-15

Creator: Sean Cleary, Murray Elder, Jennifer Taback

Access: Open access

We study languages of geodesics in lamplighter groups and Thompson's group F. We show that the lamplighter groups Ln have infinitely many cone types, have no regular geodesic languages, and have 1-counter, context-free and counter geodesic languages with respect to certain generating sets. We show that the full language of geodesics with respect to one generating set for the lamplighter group is not counter but is context-free, while with respect to another generating set the full language of geodesics is counter and context-free. In Thompson's group F with respect to the standard finite generating set, we show there are infinitely many cone types and that there is no regular language of geodesics. We show that the existence of families of "seesaw" elements with respect to a given generating set in a finitely generated infinite group precludes a regular language of geodesics and guarantees infinitely many cone types with respect to that generating set. © 2005 Elsevier Inc. All rights reserved.

Date: 1975-01-01

Access: Open access

Exhibition catalogue Bowdoin College, Museum of Art.

Date: 1991-07-01

Creator: David L. Murray, Bruce D. Kohorn

Access: Open access

• Embargo End Date: 2025-05-14

Date: 2020-01-01

Creator: Grace Ann Fenwick

Access: Embargoed

Date: 1910-01-01

Access: Open access

Bowdoin College Bulletin no. 26

Date: 2014-04-30

Creator: M. Ram Murty, Naomi Tanabe

Access: Open access

In 2011, M.R. Murty and V.K. Murty [10] proved that if L(s, χD) is the Dirichlet L-series attached a quadratic character χD, and L'(1, χD)=0, then eγ is transcendental. This paper investigates such phenomena in wider collections of L-functions, with a special emphasis on Artin L-functions. Instead of s=1, we consider s=1/2. More precisely, we prove thatexp (L'(1/2,χ)L(1/2,χ)-αγ) is transcendental with some rational number α. In particular, if we have L(1/2, χ)≠0 and L'(1/2, χ)=0 for some Artin L-series, we deduce the transcendence of eγ.

Date: 2020-01-01

Creator: Audrey J. Muscato

Access: Open access

Central pattern generators (CPGs) produce patterned outputs independent of sensory input. The cardiac neuromuscular system of the American lobster (Homarus americanus) is driven by a CPG called the cardiac ganglion (CG), which is composed of nine neurons, making it a model system of study. Modulation of CPGs allows for functional flexibility. One neuropeptide family that modulates the CG is C-type allatostatin (AST-C I-III). Previous research has shown variation in the responses of the CG across the three isoforms and among individuals. First, we investigated why AST-C I and III elicit responses that are more similar to each other than they are to the responses elicited by AST-C II. We hypothesized that an amino acid difference in the conserved sequence was responsible for the observed variation in responses. We synthesized isoforms of AST-C that replaced the endogenous amino acid and recorded responses to these isoforms. The identity of one particular amino acid in the conserved sequence seems to be responsible for variations in responses in frequency. Next, we focused on variation among individuals in their responses to AST-C I and III. We hypothesized that the mechanism behind this individual variation is differential expression of AST-C receptors and/or their downstream targets. We recorded physiological responses of the cardiac system to AST-C and then sequenced CG RNA from the same lobsters. Differential expression of one of the AST-C receptors and a number of downstream factors is correlated with physiological response. These findings inspire further experimentation investigating molt cycle as the underlying cause.

Date: 2020-03-01

Creator: Zoe M. Wood, Patricia L. Jones

Access: Open access

Philaenus spumarius (Meadow Spittlebug, Homoptera: Cercopoidea) is a cosmopolitan generalist insect that feeds on a wide repertoire of host plants in the field. We studied density and growth of Meadow Spittlebugs on a range of host plants on Kent Island, a boreal island in the Bay of Fundy, NB, Canada. The highest spittlebug densities were on Cirsium arvense (Canadian Thistle), although spittlebugs had larger body sizes on Solidago rugosa (Rough-stemmed Goldenrod) and Anaphalis margaritacea (Pearly Everlasting). We fertilized plots of Rough-stemmed Goldenrod in the field over 3 weeks to examine the effects of plant quality on development of Meadow Spittlebugs. Following fertilization, there were fewer nymphs present in fertilized plots than in unfertilized plots, indicating faster nymph maturation to adulthood on fertilized plants. This study offers an initial report of the host plants used by Meadow Spittlebugs in northeastern boreal habitat, variation in density and performance of the species on a range of host plants, and the effects of plant fertilization on spittlebug life history.

Date: 1962-01-01

Access: Open access

Exhibition catalogue for Bowdoin College Museum of Art, January 20-February 28, 1962.

Date: 1939-01-01

Access: Open access