Showing 4321 - 4330 of 5831 Items
An Investigation of Genetics-Based Machine Learning as Applied to Global Crop Yields Access to this record is restricted to members of the Bowdoin community. Log in here to view.
Date: 2017-05-01
Creator: William Gantt
Access: Access restricted to the Bowdoin Community
Mythologies modernes : à la recherche des écrivaines dans la capitale littéraire de Paris de l’entre-deux-guerres This record is embargoed.
- Embargo End Date: 2029-05-16
Date: 2024-01-01
Creator: Stephanie Ruth McCurrach
Access: Embargoed
Targeted identification of glycosylated proteins in the gastric pathogen helicobacter pylori (Hp)
Date: 2013-09-01
Creator: Kanokwan Champasa, Scott A. Longwell, Aimee M. Eldridge, Elizabeth A. Stemmler, Danielle H., Dube
Access: Open access
- Virulence of the gastric pathogen Helicobacter pylori (Hp) is directly linked to the pathogen's ability to glycosylate proteins; for example, Hp flagellin proteins are heavily glycosylated with the unusual nine-carbon sugar pseudaminic acid, and this modification is absolutely essential for Hp to synthesize functional flagella and colonize the host's stomach. Although Hp's glycans are linked to pathogenesis, Hp's glycome remains poorly understood; only the two flagellin glycoproteins have been firmly characterized in Hp. Evidence from our laboratory suggests that Hp synthesizes a large number of as-yet unidentified glycoproteins. Here we set out to discover Hp's glycoproteins by coupling glycan metabolic labeling with mass spectrometry analysis. An assessment of the subcellular distribution of azide-labeled proteins by Western blot analysis indicated that glycoproteins are present throughout Hp and may therefore serve diverse functions. To identify these species, Hp's azide-labeled glycoproteins were tagged via Staudinger ligation, enriched by tandem affinity chromatography, and analyzed by multidimensional protein identification technology. Direct comparison of enriched azide-labeled glycoproteins with a mock-enriched control by both SDS-PAGE and mass spectrometry-based analyses confirmed the selective enrichment of azide-labeled glycoproteins. We identified 125 candidate glycoproteins with diverse biological functions, including those linked with pathogenesis. Mass spectrometry analyses of enriched azide-labeled glycoproteins before and after cleavage of O-linked glycans revealed the presence of Staudinger ligation-glycan adducts in samples only after beta-elimination, confirming the synthesis of O-linked glycoproteins in Hp. Finally, the secreted colonization factors urease alpha and urease beta were biochemically validated as glycosylated proteins via Western blot analysis as well as by mass spectrometry analysis of cleaved glycan products. These data set the stage for the development of glycosylation-based therapeutic strategies, such as new vaccines based on natively glycosylated Hp proteins, to eradicate Hp infection. Broadly, this report validates metabolic labeling as an effective and efficient approach for the identification of bacterial glycoproteins. © 2013 by The American Society for Biochemistry and Molecular Biology, Inc.
Identification of SYWKQCAFNAVSCFamide: A broadly conserved crustacean C-type allatostatin-like peptide with both neuromodulatory and cardioactive properties
Date: 2009-04-15
Creator: Patsy S. Dickinson, Teerawat Wiwatpanit, Emily R. Gabranski, Rachel J. Ackerman, Jake S., Stevens, Christopher R. Cashman, Elizabeth A. Stemmler, Andrew E. Christie
Access: Open access
- The allatostatins comprise three structurally distinct peptide families that regulate juvenile hormone production by the insect corpora allata. A-type family members contain the C-terminal motif -YXFGLamide and have been found in species from numerous arthropod taxa. Members of the B-type family exhibit a -WX6Wamide C-terminus and, like the A-type peptides, appear to be broadly conserved within the Arthropoda. By contrast, members of the C-type family, typified by the unblocked C-terminus -PISCF, a pyroglutamine blocked N-terminus, and a disulfide bridge between two internal Cys residues, have only been found in holometabolous insects, i.e. lepidopterans and dipterans. Here, using transcriptomics, we have identified SYWKQCAFNAVSCFamide (disulfide bridging predicted between the two Cys residues), a known honeybee and water flea C-typelike peptide, from the American lobster Homarus americanus (infraorder Astacidea). Using matrix assisted laser desorption/ionization Fourier transform mass spectrometry (MALDI-FTMS), a mass corresponding to that of SYWKQCAFNAVSCFamide was detected in the H. americanus brain, supporting the existence of this peptide and its theorized structure. Furthermore, SYWKQCAFNAVSCFamide was detected by MALDI-FTMS in neural tissues from five additional astacideans as well as 19 members of four other decapod infraorders (i.e. Achelata, Anomura, Brachyura and Thalassinidea), suggesting that it is a broadly conserved decapod peptide. In H. americanus, SYWKQCAFNAVSCFamide is capable of modulating the output of both the pyloric circuit of the stomatogastric nervous system and the heart. This is the first demonstration of bioactivity for this peptide in any species.
Examining the role of GRP and LIK1 in Wall Associated Kinase (WAK) perception of pectin in the plant cell wall
Date: 2017-01-01
Creator: Jack Ryan Mitchell
Access: Open access
- Wall associated kinases (WAKs) are cell membrane bound receptor kinases that bind pectin and pectin fragments (OGs).The binding of WAKs to pectin sends a growth signal required for cell elongation and plant development. WAKs bind OGs with higher affinity than native pectin and instead activate a stress response. Glycine rich proteins (GRPs) are secreted cell wall proteins of unknown function. Seven GRPs with 65% sequence similarity are coded on a 90kb locus of Arabidopsis chromosome 2. GRP3 and WAK1 have been shown to bind in vitro, but single null mutations have no discernible phenotype, suggesting that the GRPs are redundant. Low recombination frequency has made multiple mutations difficult to achieve, but in this thesis, CRISPR/Cas9 technology was used to induce deletions of the GRP locus. The promoters pYAO and pICU2 drove Cas9 expression in transformed Arabidopsis plants. The presence of a deletion and Cas9 were detected by PCR. While somatic mutations were induced, there was no inheritance of the GRP deletion, indicating that pYAO and pICU2 do not drive Cas9 to induce deletions in progenitor cells. LIK1 is a CERK1 interacting kinase implicated in mediating response to various microbe associated molecular patterns (MAMP) such as chitin, flagellin, and peptidoglycans. LIK1 exhibits a drastic increase in phosphorylation in response to OG treatment, making it a candidate for a co-receptor to WAK. T-DNA insertions to the 5’UTR of LIK1 were used to examine the effect of a lik1 mutation on the OG induced stress response. lik1/lik1 mutant seedlings were grown in the presence and absence of OGs, and RNA was isolated. qPCR was used on cDNA to examine FADLOX expression, a reporter for the transcriptional response to OGs. The lik1/lik1 mutant caused a reduction in the OG induced transcriptional response. However, increased LIK1 expression was associated with the T-DNA insertion indicating that LIK1 inhibits the WAK stress response pathway. Understanding the roles of GRP and LIK1 in moderating WAK mediated pathogenic response in Arabidopsis will enable a better understanding of plant resistance to pathogen invasion in the greater plant kingdom.
The Ethiopian Student Movement and the Dilemma of Eritrean Sovereignty
Date: 2024-01-01
Creator: Liat G. Tesfazgi
Access: Open access
- From the perspective of Ethiopian royalists, Pan-Africanists, Marxist internationalists, supports of union, and the broader international community, Eritrean nationalism revealed distressing fissures in many different arguments for preserving Ethiopian territorial unity– arguments not necessarily or explicitly problematic, but nevertheless in opposition to Eritrean demands for the right to national self-determination. For the Ethiopian Student Movement (ESM) specifically, Eritrean sovereignty demanded a reconfiguration of Pan-African unity that conflicted with Ethiopian exceptionalist historiography. Through an analysis of student politics at Haile Selassie University, from 1960-1974, this thesis seeks to complicate existing historiography on the ESM by examining the periodically divergent experiences of Eritrean student activists.
Self-Censorsh** in the Classroom This record is embargoed.
- Embargo End Date: 2027-05-14
Date: 2024-01-01
Creator: Sarah Greenberg
Access: Embargoed
Neural compensation in response to salinity perturbation in the cardiac ganglion of the American lobster, Homarus americanus
Date: 2024-01-01
Creator: Josephine P. Tidmore
Access: Open access
- Central pattern generator (CPG) networks produce the rhythmic motor patterns that underlie critical behaviors such as breathing, walking, and heartbeat. The fidelity of these neural circuits in response to fluctuations in environmental conditions is essential for organismal survival. The specific ion channel profile of a neuron dictates its electrophysiological phenotype and is under homeostatic control, as channel proteins are constantly turning over in the membrane in response to internal and external stimuli. Neuronal function depends on ion channels and biophysical processes that are sensitive to external variables such as temperature, pH, and salinity. Nonetheless, the nervous system of the American lobster (Homarus americanus) is robust to global perturbations in these variables. The cardiac ganglion (CG), the CPG that controls the rhythmic activation of the heart in the lobster, has been shown to maintain function across a relatively wide, ecologically-relevant range of saline concentrations in the short-term. This study investigates whether individual neurons of the CG sense and compensate for long-term changes in extracellular ion concentration by controlling their ion channel mRNA abundances. To do this, I bathed the isolated CG in either 0.75x, 1.5x, or 1x (physiological) saline concentrations for 24 h. I then dissected out individual CG motor neurons, the pacemaker neurons, and sections of axonal projections and used single-cell RT-qPCR to measure relative mRNA abundances of several species of ion channels in these cells. I found that the CG maintained stable output with 24 h exposure to altered saline concentrations (0.75x and 1.5x), and that this stability may indeed be enabled by changes in mRNA abundances and correlated channel relationships.
Out of Time: Queer Resistance to Chrononormativity in the Poetry of Emily Dickinson
Date: 2025-01-01
Creator: Elana Sheinkopf
Access: Open access
Interview with Jane O’Connor by Brien Williams
Date: 2010-05-20
Creator: Jane F O'Connor
Access: Open access
Biographial Note
Jane Frances O’Connor was born on March 13, 1960, in Augusta, Maine. She was one of twelve children born to Barbara Louise (Murray) and Dr. Francis J. O’Connor, both from Dorchester, Massachusetts. Her father was head of radiology at Augusta General Hospital; her mother was an artist and musician who stayed at home while her children were young. After growing up in Augusta in a nonpolitical family, Jane attended the University of Southern Maine and, later, Trinity College in Washington, DC. In the summer of 1980, she became an intern for Beverly Bustin-Hatheway, accompanying her around the state as a field representative for Senator George Mitchell, and she spent much of the summer helping pack up Senator Muskie’s papers for repository retention. In June 1981, O’Connor accepted a full time position as receptionist in Senator Mitchell’s office in Washington, DC, remaining in that position for about eight years. After Mitchell’s departure from the Senate, she went to work for a trade association.
Summary
Interview includes discussion of: Beverly Bustin’s state legislative campaign; Senate office staff in DC; Mitchell’s sense of humor; telephone story; bread story; brownies story; description of Senator Mitchell’s various offices and staff roles; Mitchell’s Senate retirement; his frugality; the apartment/video store story; Mitchell Institute; Gayle Cory; Martha Pope; and education of staff.