Showing 4821 - 4830 of 5713 Items
Word Embedding Driven Concept Detection in Philosophical Corpora
Date: 2020-01-01
Creator: Dylan Hayton-Ruffner
Access: Open access
- During the course of research, scholars often explore large textual databases for segments of text relevant to their conceptual analyses. This study proposes, develops and evaluates two algorithms for automated concept detection in theoretical corpora: ACS and WMD retrieval. Both novel algorithms are compared to key word retrieval, using a test set from the Digital Ricoeur corpus tagged by scholarly experts. WMD retrieval outperforms key word search on the concept detection task. Thus, WMD retrieval is a promising tool for concept detection and information retrieval systems focused on theoretical corpora.
Linking genotype to phenotype in a changing ocean: inferring the genomic architecture of a blue mussel stress response with genome-wide association
Date: 2018-03-01
Creator: S. E. Kingston, P. Martino, M. Melendy, F. A. Reed, D. B., Carlon
Access: Open access
- A key component to understanding the evolutionary response to a changing climate is linking underlying genetic variation to phenotypic variation in stress response. Here, we use a genome-wide association approach (GWAS) to understand the genetic architecture of calcification rates under simulated climate stress. We take advantage of the genomic gradient across the blue mussel hybrid zone (Mytilus edulis and Mytilus trossulus) in the Gulf of Maine (GOM) to link genetic variation with variance in calcification rates in response to simulated climate change. Falling calcium carbonate saturation states are predicted to negatively impact many marine organisms that build calcium carbonate shells – like blue mussels. We sampled wild mussels and measured net calcification phenotypes after exposing mussels to a ‘climate change’ common garden, where we raised temperature by 3°C, decreased pH by 0.2 units and limited food supply by filtering out planktonic particles >5 μm, compared to ambient GOM conditions in the summer. This climate change exposure greatly increased phenotypic variation in net calcification rates compared to ambient conditions. We then used regression models to link the phenotypic variation with over 170 000 single nucleotide polymorphism loci (SNPs) generated by genotype by sequencing to identify genomic locations associated with calcification phenotype, and estimate heritability and architecture of the trait. We identified at least one of potentially 2–10 genomic regions responsible for 30% of the phenotypic variation in calcification rates that are potential targets of natural selection by climate change. Our simulations suggest a power of 13.7% with our study's average effective sample size of 118 individuals and rare alleles, but a power of >90% when effective sample size is 900.
Cloning of the first cDNA encoding a putative CCRFamide precursor: identification of the brain, eyestalk ganglia, and cardiac ganglion as sites of CCRFamide expression in the American lobster, Homarus americanus
Date: 2020-12-01
Creator: J. Joe Hull, Melissa A. Stefanek, Patsy S. Dickinson, Andrew E. Christie
Access: Open access
- Over the past decade, many new peptide families have been identified via in silico analyses of genomic and transcriptomic datasets. While various molecular and biochemical methods have confirmed the existence of some of these new groups, others remain in silico discoveries of computationally assembled sequences only. An example of the latter are the CCRFamides, named for the predicted presence of two pairs of disulfide bonded cysteine residues and an amidated arginine-phenylalanine carboxyl-terminus in family members, which have been identified from annelid, molluscan, and arthropod genomes/transcriptomes, but for which no precursor protein-encoding cDNAs have been cloned. Using routine transcriptome mining methods, we identified four Homarus americanus (American lobster) CCRFamide transcripts that share high sequence identity across the predicted open reading frames but more limited conservation in their 5′ terminal ends, suggesting the Homarus gene undergoes alternative splicing. RT-PCR profiling using primers designed to amplify an internal fragment common to all of the transcripts revealed expression in the supraoesophageal ganglion (brain), eyestalk ganglia, and cardiac ganglion. Variant specific profiling revealed a similar profile for variant 1, eyestalk ganglia specific expression of variant 2, and an absence of variant 3 expression in the cDNAs examined. The broad distribution of CCRFamide transcript expression in the H. americanus nervous system suggests a potential role as a locally released and/or circulating neuropeptide. This is the first report of the cloning of a CCRFamide-encoding cDNA from any species, and as such, provides the first non-in silico support for the existence of this invertebrate peptide family.
Bowdoin College Catalogue (1946-1947)
Date: 1947-01-01
Access: Open access
- Bowdoin College Bulletin no. 284
Bowdoin College Catalogue (1954-1955)
Date: 1955-01-01
Access: Open access
- Bowdoin College Bulletin no. 314
Measurements of semileptonic branching fractions of B mesons at the '(4S) resonance
Date: 1992-01-01
Creator: S. Henderson, K. Kinoshita, F. Pipkin, M. Procario, M., Saulnier, R. Wilson, J. Wolinski, D. Xiao, R. Ammar, P. Baringer, D. Coppage, R. Davis, P. Haas, M. Kelly, N. Kwak, Ha Lam, S. Ro, Y. Kubota, J. K. Nelson, D. Perticone, R. Poling, S. Schrenk, G. Crawford, R. Fulton, T. Jensen, D. R. Johnson, H. Kagan, R. Kass, R. Malchow, F. Morrow, J. Whitmore
Access: Open access
- We report new measurements of semileptonic branching fractions of B mesons produced at the '(4S) resonance determined by fitting the inclusive electron and muon momentum spectra to different theoretical models. Using B(B»'X"-») to denote the average of the semileptonic branching fractions for B decay to electrons and muons, we obtain B(B»'X"-»)= (10.5±0.2±0.4)% using the refined free-quark model of Altarelli et al., and B(B»'X"-»)=(11.2±0.3±0.4)% using a modified version of the form-factor model of Isgur et al., in which the D**"-» contribution is allowed to float in the fit. The average of these two results is B(B»'X"-»)=(10.8±0. 2±0.4±0.4)%, where the errors are statistical, systematic uncertainties in the measurement, and systematic uncertainties associated with the theoretical models, respectively. Semileptonic branching fractions as low as this are difficult to accommodate in theoretical models where hadronic B-meson decays arise only from spectator diagrams. We use dilepton yields to limit the uncertainty in the semileptonic branching fraction due to the possible existence of non-BB» decays of the '(4S). In addition, we tag neutral B mesons using the decays B»0'D*+- and B»0'D*+"-» to obtain the first direct measurement of semileptonic branching fractions for neutral B mesons; the average of the electron and muon results for neutral B mesons is B(B»0'X"-»)=(9.9±3.0±0.9)%. © 1992 The American Physical Society.
SIFamide peptides modulate cardiac activity differently in two species of Cancer crab
Date: 2019-10-01
Creator: Patsy S. Dickinson, Heidi M. Samuel, Elizabeth A. Stemmler, Andrew E. Christie
Access: Open access
- The SIFamides are a broadly conserved arthropod peptide family characterized by the C-terminal motif –SIFamide. In decapod crustaceans, two isoforms of SIFamide are known, GYRKPPFNGSIFamide (Gly1-SIFamide), which is nearly ubiquitously conserved in the order, and VYRKPPFNGSIFamide (Val1-SIFamide), known only from members of the astacidean genus Homarus. While much work has focused on the identification of SIFamide isoforms in decapods, there are few direct demonstrations of physiological function for members of the peptide family in this taxon. Here, we assessed the effects of Gly1- and Val1-SIFamide on the cardiac neuromuscular system of two closely related species of Cancer crab, Cancer borealis and Cancer irroratus. In each species, both peptides were cardioactive, with identical, dose-dependent effects elicited by both isoforms in a given species. Threshold concentrations for bioactivity are in the range typically associated with hormonal delivery, i.e., 10−9 to 10−8 M. Interestingly, and quite surprisingly, while the predicted effects of SIFamide on cardiac output are similar in both C. borealis and C. irroratus, frequency effects predominate in C. borealis, while amplitude effects predominate in C. irroratus. These findings suggest that, while SIFamide is likely to increase cardiac output in both crabs, the mechanism through which this is achieved is different in the two species. Immunohistochemical/mass spectrometric data suggest that SIFamide is delivered to the heart hormonally rather than locally, with the source of hormonal release being midgut epithelial endocrine cells in both Cancer species. If so, midgut-derived SIFamide may function as a regulator of cardiac output during the process of digestion.
Statement by Douglas Chapman collected by Erika Bjorum on August 9, 2023
Date: 2023-08-09
Creator: Douglas Chapman
Access: Open access
- This statement was given privately.
Measurement of baryon production in B-meson decay
Date: 1992-01-01
Creator: G. Crawford, R. Fulton, T. Jensen, D. R. Johnson, H., Kagan, R. Kass, R. Malchow, F. Morrow, J. Whitmore, P. Wilson, D. Bortoletto, D. Brown, J. Dominick, R. L. McIlwain, D. H. Miller, M. Modesitt, C. R. Ng, S. F. Schaffner, E. I. Shibata, I. P.J. Shipsey, M. Battle, H. Kroha, K. Sparks, E. H. Thorndike, C. H. Wang, M. S. Alam, I. J. Kim, W. C. Li, X. C. Lou, B. Nemati, V. Romero
Access: Open access
- Using the CLEO detector at the Cornell Electron Storage Ring, we observe B-meson decays to c+ and report on improved measurements of inclusive branching fractions and momentum spectra of other baryons. For the inclusive decay Bc+X with c+pK-+, we find that the product branching fraction B(Bc+X)B(c+pK-+)=(0.273±0.051±0.039)%. Our measured inclusive branching fractions to noncharmed baryons are B(BpX)=(8.0±0.5±0.3)%, B(BX)=(3.8±0.4±0.6)%, and B(B-X)=(0.27±0.05±0.04)%. From these rates and studies of baryon-lepton and baryon-antibaryon correlations in B decays, we have estimated the branching fraction B(Bc+X) to be (6.40.8±0.8)%. Combining these results, we calculate B(c+pK-) to be (4.3±1.0±0.8)%. © 1992 The American Physical Society.