Showing 4451 - 4500 of 5840 Items
Quantification of dendritic and axonal growth after injury to the auditory system of the adult cricket gryllus bimaculatus
Date: 2013-09-27
Creator: Alexandra Pfister, Amy Johnson, Olaf Ellers, Hadley W. Horch
Access: Open access
- Dendrite and axon growth and branching during development are regulated by a complex set of intracellular and external signals. However, the cues that maintain or influence adult neuronal morphology are less well understood. Injury and deafferentation tend to have negative effects on adult nervous systems. An interesting example of injury-induced compensatory growth is seen in the cricket, Gryllus bimaculatus. After unilateral loss of an ear in the adult cricket, auditory neurons within the central nervous system (CNS) sprout to compensate for the injury. Specifically, after being deafferented, ascending neurons (AN-1 and AN-2) send dendrites across the midline of the prothoracic ganglion where they receive input from auditory afferents that project through the contralateral auditory nerve (N5). Deafferentation also triggers contralateral N5 axonal growth. In this study, we quantified AN dendritic and N5 axonal growth at 30 h, as well as at 3, 5, 7, 14, and 20 days after deafferentation in adult crickets. Significant differences in the rates of dendritic growth between males and females were noted. In females, dendritic growth rates were non-linear; a rapid burst of dendritic extension in the first few days was followed by a plateau reached at 3 days after deafferentation. In males, however, dendritic growth rates were linear, with dendrites growing steadily over time and reaching lengths, on average, twice as long as in females. On the other hand, rates of N5 axonal growth showed no significant sexual dimorphism and were linear. Within each animal, the growth rates of dendrites and axons were not correlated, indicating that independent factors likely influence dendritic and axonal growth in response to injury in this system. Our findings provide a basis for future study of the cellular features that allow differing dendrite and axon growth patterns as well as sexually dimorphic dendritic growth in response to deafferentation. © 2013 Pfister, Johnson, Ellers and Horch.
Field information links permafrost carbon to physical vulnerabilities of thawing
Date: 2012-08-16
Creator: Jennifer W. Harden, Charles D. Koven, Chien Lu Ping, Gustaf Hugelius, A., David McGuire, Phillip Camill, Torre Jorgenson, Peter Kuhry, Gary J. Michaelson, Jonathan A. O'Donnell, Edward A.G. Schuur, Charles Tarnocai, Kristopher Johnson, Guido Grosse
Access: Open access
- Deep soil profiles containing permafrost (Gelisols) were characterized for organic carbon (C) and total nitrogen (N) stocks to 3m depths. Using the Community Climate System Model (CCSM4) we calculate cumulative distributions of active layer thickness (ALT) under current and future climates. The difference in cumulative ALT distributions over time was multiplied by C and N contents of soil horizons in Gelisol suborders to calculate newly thawed C and N. Thawing ranged from 147 PgC with 10 PgN by 2050 (representative concentration pathway RCP scenario 4.5) to 436 PgC with 29 PgN by 2100 (RCP 8.5). Organic horizons that thaw are vulnerable to combustion, and all horizon types are vulnerable to shifts in hydrology and decomposition. The rates and extent of such losses are unknown and can be further constrained by linking field and modelling approaches. These changes have the potential for strong additional loading to our atmosphere, water resources, and ecosystems. © 2012. American Geophysical Union. All Rights Reserved.
Peatlands as a model ecosystem of soil carbon dynamics: Reply to Comment on "peatlands and their role in the global carbon cycle"
Date: 2012-01-01
Creator: Zicheng Yu, D. W. Beilman, S. Frolking, G. M. MacDonald, N. T., Roulet, P. Camill, D. J. Charman
Access: Open access
Attention training for reducing spider fear in spider-fearful individuals
Date: 2010-10-01
Creator: Hannah E. Reese, Richard J. McNally, Sadia Najmi, Nader Amir
Access: Open access
- Cognitive theorists propose that attentional biases for threatening information play an important role in the development and maintenance of anxiety disorders. If attentional biases for threat figure in the maintenance of anxiety, then the experimental reduction of the bias for threat (attention training) should reduce anxiety. We randomly assigned 41 spider-fearful individuals to receive either attention training (n=20) or control procedures (n=21). We used a modified dot-probe discrimination paradigm with photographs of spiders and cows to train attention. Training reduced attentional bias for spiders, but only temporarily. Although both groups declined in spider fear and avoidance, reduction in attentional bias did not produce significantly greater symptom reduction in the training group than in the control group. However, reduction in attentional bias predicted reduction in self-reported fear for the training group. The reduction in attentional bias for threat may have been insufficiently robust to produce symptom reduction greater than that produced by exposure to a live spider and spider photographs alone. Alternatively, attention training may be an unsuitable intervention for spider fear. © 2010 Elsevier Ltd.
Probing the National Geoscience Faculty Survey for Reported Use of Practices that Support Inclusive Learning Environments in Undergraduate Courses
Date: 2019-07-17
Creator: Rachel J. Beane, Karen S. McNeal, R. Heather Macdonald
Access: Open access
- What is the extent to which college and university geoscience faculty report using education practices that contribute to more inclusive learning environments and engage a diverse population of students? In the 2016 National Geoscience Faculty Survey, faculty answered questions about their practices in a specific introductory or major course they had taught in the previous two years, and about how they share and learn about the content and methods used in their teaching. Based on factor analysis, 22 of the survey questions divided into four categories associated with inclusive teaching practices: geoscientist representations, curricular choices, learning strategies, and career pathways. The self-reported use of practices across these four categories varies greatly, with some used by as many as 71% of faculty respondents whereas others by only 8%. These data provide new information on the current state of teaching practices in the geosciences with regard to inclusive practices, and establish a baseline to which responses from future surveys may be compared. Univariate general modeling combined with ANOVA tests on the responses to the questions shows that education practices differ based on variables such as teaching style, communication with colleagues, years of teaching experience, faculty type, institution type, class size, and course type (introductory or major). These differences suggest opportunities for focused geoscience faculty development around education practices that support the success of a diverse population of undergraduate students and the enhancement of inclusive learning environments in the geosciences.
Waterborne cues from crabs induce thicker skeletons, smaller gonads and size-specific changes in growth rate in sea urchins
Date: 2009-04-01
Creator: Rebecca Selden, Amy S. Johnson, Olaf Ellers
Access: Open access
- Indirect predator-induced effects on growth, morphology and reproduction have been extensively studied in marine invertebrates but usually without consideration of size-specific effects and not at all in post-metamorphic echinoids. Urchins are an unusually good system, in which, to study size effects because individuals of various ages within one species span four orders of magnitude in weight while retaining a nearly isometric morphology. We tracked growth of urchins, Strongylocentrotus droebachiensis (0.013-161.385 g), in the presence or absence of waterborne cues from predatory Jonah crabs, Cancer borealis. We ran experiments at ambient temperatures, once for 4 weeks during summer and again, with a second set of urchins, for 22 weeks over winter. We used a scaled, cube-root transformation of weight for measuring size more precisely and for equalizing variance across sizes. Growth rate of the smallest urchins (summer: diameter; winter: diameter) decreased by 40-42% in response to crab cues. In contrast, growth rate of larger urchins was unaffected in the summer and increased in response to crab scent by 7% in the winter. At the end of the 22-week experiment, additional gonadal and skeletal variables were measured. Cue-exposed urchins developed heavier, thicker skeletons and smaller gonads, but no differences in spine length or jaw size. The differences depended on urchin size, suggesting that there are size-specific shifts in gonadal and somatic investment in urchins.
Information-Processing Approaches to Understanding Anxiety Disorders
Date: 2008-09-04
Creator: Richard J. McNally, Hannah E. Reese
Access: Open access
- Experimental psychopathologists have used cognitive psychology paradigms to elucidate information-processing biases in the anxiety disorders. A vast literature now suggests that patients with anxiety disorders are characterized by an attentional bias for threatening information and a bias toward threatening interpretations of ambiguous information. A memory bias favoring recall of threatening information occurs in panic disorder, but rarely in other anxiety disorders. New treatments involving the experimental modification of cognitive biases are promising.
Daniel Putnam Brinley: The Impressionist Years
Date: 1978-01-01
Creator: Margaret Burke Clunie
Access: Open access
- Catalogue of an exhibition held at Bowdoin College Museum of Art, Brunswick, Me., Apr. 14-June 18, 1978.
The Disembodied Spirit
Date: 2003-01-01
Access: Open access
- Exhibition catalog: Bowdoin College Museum of Art, Sept. 25-Dec. 7, 2003; Kemper Museum of Contemporary Art (Kansas City, Mo.), Mar. 5-May 23, 2004; Austin (Texas) Museum of Art, Sept. 11-Nov. 28, 2004 Includes essays by Tom Gunning and Pamela Thurschwell.
Using metabolic oligosaccharide engineering to induce immune-mediated cell killing of bacterial pathogens Access to this record is restricted to members of the Bowdoin community. Log in here to view.
Date: 2020-01-01
Creator: Brendan H. Pulsifer
Access: Access restricted to the Bowdoin Community
Pectin dependent cell adhesion restored by a mutant microtubule organizing membrane protein
Date: 2021-04-01
Creator: Bruce D. Kohorn, Jacob Dexter-Meldrum, Frances D.H. Zorensky, Salem Chabout, Gregory, Mouille, Susan Kohorn
Access: Open access
- The cellulose-and pectin-rich plant cell wall defines cell structure, mediates defense against pathogens, and facilitates plant cell adhesion. An adhesion mutant screen of Arabidopsis hypocotyls identified a new allele of QUASIMODO2 (QUA2), a gene required for pectin accumulation and whose mutants have reduced pectin content and adhesion defects. A suppressor of qua2 was also isolated and describes a null allele of SABRE (SAB), which encodes a previously described plasma membrane protein required for longitudinal cellular expansion that organizes the tubulin cytoskeleton. sab mutants have increased pectin content, increased levels of expression of pectin methylesterases and extensins, and reduced cell surface area relative to qua2 and Wild Type, con-tributing to a restoration of cell adhesion.
Maintenance of dynamic strain similarity and environmental stres factor in different flow habitats: Thallus allometry and material properties of a giant kelp
Date: 1994-01-01
Creator: A. S. Johnson, M. A.R. Koehl
Access: Open access
Phenylisocyanide Ligand Synthesis and Coordination to a Cobalt Catalyst for Dimerization of Linear Alpha Olefins Access to this record is restricted to members of the Bowdoin community. Log in here to view.
Date: 2020-01-01
Creator: Julia Hazlitt Morris
Access: Access restricted to the Bowdoin Community
Hands to Work and Hearts to God: The Shaker Tradition in Maine
Date: 1969-01-01
Creator: Theodore Elliot
Access: Open access
- "Catalogue [published] on the occasion of an exhibition [at Bowdoin] of Shaker art, furniture, and objects, mostly of Maine manufacture, now at Sabbathday Lake"--Foreword
Design and Impact of the National Workshop for Early Career Geoscience Faculty
Date: 2020-02-12
Creator: Rachel J. Beane, Ellen R. Altermatt, Ellen R. Iverson, R. Heather Macdonald
Access: Open access
- The National Association of Geoscience Teachers’ Workshop for Early Career Geoscience Faculty: Teaching, Research, and Managing One’s Career has been offered annually since 1999. The five-day workshop with accompanying web resources employs a “whole faculty” approach to support geoscience faculty members during their transition into academic careers. More than 1,000 faculty members (53% female, 47% male) have attended the national workshop; 52% from doctoral-granting institutions, 15% master’s, 28% bachelor’s, and 5% associates. Evidence-based instructional practices are shared and modeled during workshop sessions. Situated learning theory grounds the workshop design and promotes the development of a community of practice. Examination of the 2016 National Geoscience Faculty Survey data using univariate analyses of covariance (ANCOVAs) showed that workshop alumni report spending more class time on student activities, questions, and discussion than faculty members who did not participate in the workshop, particularly on small group discussions or think-pair-share and in-class exercises (for introductory courses p < .05; for majors courses p < .001). Workshop alumni also were more likely than faculty who did not participate to report feeling part of a geoscience community that shares their goals, philosophy, and values for geoscience education (p < .01), more likely to report that interactions with this community help them to become better educators (p < .001), and more likely to attend talks on teaching methods or science education (p < .001). Although causality cannot be established without random assignment, these findings are consistent with the hypothesis that this discipline-based workshop with its holistic approach is effective at promoting evidence-based teaching strategies and a community of practice.
Walking versus breathing: Mechanical differentiation of sea urchin podia corresponds to functional specialization
Date: 2000-01-01
Creator: Holly A. Leddy, Amy S. Johnson
Access: Open access
- The podia of sea urchins function in locomotion, adhesion, feeding, and respiration; but different podia on a single urchin are often specialized to one or more of these tasks. We examined the morphology and material properties of podia of the green sea urchin, Strongylocentrotus droebachiensis, to determine whether, despite apparent similarities, they achieve functional specialization along the oral-aboral axis through the differentiation of distinct mechanical properties. We found that oral podia, which are used primarily for locomotion and adhesion, are stronger and thicker than aboral podia, which are used primarily for capturing drift material and as a respiratory surface. The functional role of ambital podia is more ambiguous; however, they are longer and are extended at a lower strain rate than other podial types. They are also stronger and stiffer than aboral podia. In addition, all podia become stronger and stiffer when extended at faster strain rates, in some cases by nearly an order of magnitude for an order of magnitude change in strain rate. This strain-rate dependence implies that resistance to rapid loading such as that imposed by waves is high compared to resistance to slower, self-imposed loads. Thus, the serially arranged podia of S. droebachiensis are functionally specialized along an oral-aboral axis by differences in their morphology and mechanical properties.
Module structure of cells in unequal-parameter Hecke algebras
Date: 2010-09-06
Creator: Thomas Pietraho
Access: Open access
- A conjecture of Bonnafé, Geck, Iancu, and Lam parametrizes Kazhdan-Lusztig left cells for unequal-parameter Hecke algebras in type Bn by families of standard domino tableaux of arbitrary rank. Relying on a family of properties outlined by Lusztig and the recent work of Bonnafé, we verify the conjecture and describe the structure of each cell as a module for the underlying Weyl group. © 2010 by The Editorial Board of the Nagoya Mathematical Journal.
The spherical Bochner theorem on semisimple Lie groups
Date: 1975-01-01
Creator: William H. Barker
Access: Open access
- Let G be a connected semisimple Lie group with finite center and K a maximal compact subgroup. Denote (i) Harish-Chandra's Schwartz spaces by Cp(G)(0
Telling Toggles: Netsuke in Context
Date: 2002-01-01
Creator: Christine L. Paglia
Access: Open access
- "This brochure accompanies an exhibition of the same name at the Bowdoin College Museum of Art from April 11 through June 9, 2002"--P. [2] of cover
Nonlinear localized modes in two-dimensional hexagonally-packed magnetic lattices
Date: 2021-04-01
Creator: Christopher Chong, Yifan Wang, Donovan Maréchal, Efstathios G. Charalampidis, Miguel, Molerón, Alejandro J. Martínez
Access: Open access
- We conduct an extensive study of nonlinear localized modes (NLMs), which are temporally periodic and spatially localized structures, in a two-dimensional array of repelling magnets. In our experiments, we arrange a lattice in a hexagonal configuration with a light-mass defect, and we harmonically drive the center of the chain with a tunable excitation frequency, amplitude, and angle. We use a damped, driven variant of a vector Fermi-Pasta-Ulam-Tsingou lattice to model our experimental setup. Despite the idealized nature of this model, we obtain good qualitative agreement between theory and experiments for a variety of dynamical behaviors. We find that the spatial decay is direction-dependent and that drive amplitudes along fundamental displacement axes lead to nonlinear resonant peaks in frequency continuations that are similar to those that occur in one-dimensional damped, driven lattices. However, we observe numerically that driving along other directions results in asymmetric NLMs that bifurcate from the main solution branch, which consists of symmetric NLMs. We also demonstrate both experimentally and numerically that solutions that appear to be time-quasiperiodic bifurcate from the branch of symmetric time-periodic NLMs.
A dominant allele of arabidopsis pectin-binding wall-associated kinase induces a stress response suppressed by MPK6 but not MPK3 mutations
Date: 2012-01-01
Creator: Bruce D. Kohorn, Susan L. Kohorn, Tanya Todorova, Gillian Baptiste, Kevin, Stansky, Meghan McCullough
Access: Open access
- The plant cell wall is composed of a matrix of cellulose fibers, flexible pectin polymers, and an array of assorted carbohydrates and proteins. The receptor-like Wall-Associated Kinases (WAKs) of Arabidopsis bind pectin in the wall, and are necessary both for cell expansion during development and for a response to pathogens and wounding. Mitogen Activated Protein Kinases (MPKs) form a major signaling link between cell surface receptors and both transcriptional and enzyme regulation in eukaryotes, and Arabidopsis MPK6 and MPK3 indeed have important roles in development and the response to stress and pathogens. A dominant allele of WAK2 requires kinase activity and activates a stress response that includes an increased ROS accumulation and the up-regulation of numerous genes involved in pathogen resistance, wounding, and cell wall biogenesis. This dominant allele requires a functional pectin binding and kinase domain, indicating that it is engaged in a WAK signaling pathway. A null mutant of the major plasma membrane ROS-producing enzyme complex, rbohd/f does not suppress the WAK2cTAP-induced phenotype. A mpk6, but not a mpk3, null allele is able to suppress the effects of this dominant WAK2 mutation, thus distinguishing MPK3 and MPK6, whose activity previously was thought to be redundant. Pectin activation of gene expression is abated in a wak2-null, but is tempered by the WAK-dominant allele that induces elevated basal stress-related transcript levels. The results suggest a mechanism in which changes to the cell wall can lead to a large change in cellular responses and help to explain how pathogens and wounding can have general effects on growth. The Author 2011. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPB and IPPE, SIBS, CAS.2011 © The Author 2011. Published by the Molecular Plant Shanghai Editorial Office in association with Oxford University Press on behalf of CSPB and IPPE, SIBS, CAS.
Automorphisms of higher rank lamplighter groups
Date: 2015-12-01
Creator: Melanie Stein, Jennifer Taback, Peter Wong
Access: Open access
- Let τd(q) denote the group whose Cayley graph with respect to a particular generating set is the Diestel-Leader graph DLd(q), as described by Bartholdi, Neuhauser and Woess. We compute both Aut(τd(q)) and Out(τd(q)) for d ≥ 2, and apply our results to count twisted conjugacy classes in these groups when d ≥ 3. Specifically, we show that when d ≥ 3, the groups τd(q) have property R∞, that is, every automorphism has an infinite number of twisted conjugacy classes. In contrast, when d = 2 the lamplighter groups τ2(q) = Lq = Zq Z have property R∞ if and only if (q, 6)≠1.
Microevolution of Candida albicans in Macrophages Restores Filamentation in a Nonfilamentous Mutant
Date: 2014-12-01
Creator: Anja Wartenberg, Jörg Linde, Ronny Martin, Maria Schreiner, Fabian, Horn, Ilse D. Jacobsen, Sabrina Jenull, Thomas Wolf, Karl Kuchler, Reinhard Guthke, Oliver Kurzai, Anja Forche, Christophe d'Enfert, Sascha Brunke, Bernhard Hube
Access: Open access
- Following antifungal treatment, Candida albicans, and other human pathogenic fungi can undergo microevolution, which leads to the emergence of drug resistance. However, the capacity for microevolutionary adaptation of fungi goes beyond the development of resistance against antifungals. Here we used an experimental microevolution approach to show that one of the central pathogenicity mechanisms of C. albicans, the yeast-to-hyphae transition, can be subject to experimental evolution. The C. albicans cph1Δ/efg1Δ mutant is nonfilamentous, as central signaling pathways linking environmental cues to hyphal formation are disrupted. We subjected this mutant to constant selection pressure in the hostile environment of the macrophage phagosome. In a comparatively short time-frame, the mutant evolved the ability to escape macrophages by filamentation. In addition, the evolved mutant exhibited hyper-virulence in a murine infection model and an altered cell wall composition compared to the cph1Δ/efg1Δ strain. Moreover, the transcriptional regulation of hyphae-associated, and other pathogenicity-related genes became re-responsive to environmental cues in the evolved strain. We went on to identify the causative missense mutation via whole genome- and transcriptome-sequencing: a single nucleotide exchange took place within SSN3 that encodes a component of the Cdk8 module of the Mediator complex, which links transcription factors with the general transcription machinery. This mutation was responsible for the reconnection of the hyphal growth program with environmental signals in the evolved strain and was sufficient to bypass Efg1/Cph1-dependent filamentation. These data demonstrate that even central transcriptional networks can be remodeled very quickly under appropriate selection pressure.
Convergence of successive approximation methods with parameter target sets
Date: 2005-01-01
Creator: A.B. Levy
Access: Open access
Rockwell Kent Collection
Date: 1972-01-01
Creator: Richard V. West
Access: Open access
- Includes an essay by Richard V. West.
It's All Under Control: Essays Access to this record is restricted to members of the Bowdoin community. Log in here to view.
Date: 2020-01-01
Creator: Jack Tarlton
Access: Access restricted to the Bowdoin Community
Word Embedding Driven Concept Detection in Philosophical Corpora
Date: 2020-01-01
Creator: Dylan Hayton-Ruffner
Access: Open access
- During the course of research, scholars often explore large textual databases for segments of text relevant to their conceptual analyses. This study proposes, develops and evaluates two algorithms for automated concept detection in theoretical corpora: ACS and WMD retrieval. Both novel algorithms are compared to key word retrieval, using a test set from the Digital Ricoeur corpus tagged by scholarly experts. WMD retrieval outperforms key word search on the concept detection task. Thus, WMD retrieval is a promising tool for concept detection and information retrieval systems focused on theoretical corpora.
Linking genotype to phenotype in a changing ocean: inferring the genomic architecture of a blue mussel stress response with genome-wide association
Date: 2018-03-01
Creator: S. E. Kingston, P. Martino, M. Melendy, F. A. Reed, D. B., Carlon
Access: Open access
- A key component to understanding the evolutionary response to a changing climate is linking underlying genetic variation to phenotypic variation in stress response. Here, we use a genome-wide association approach (GWAS) to understand the genetic architecture of calcification rates under simulated climate stress. We take advantage of the genomic gradient across the blue mussel hybrid zone (Mytilus edulis and Mytilus trossulus) in the Gulf of Maine (GOM) to link genetic variation with variance in calcification rates in response to simulated climate change. Falling calcium carbonate saturation states are predicted to negatively impact many marine organisms that build calcium carbonate shells – like blue mussels. We sampled wild mussels and measured net calcification phenotypes after exposing mussels to a ‘climate change’ common garden, where we raised temperature by 3°C, decreased pH by 0.2 units and limited food supply by filtering out planktonic particles >5 μm, compared to ambient GOM conditions in the summer. This climate change exposure greatly increased phenotypic variation in net calcification rates compared to ambient conditions. We then used regression models to link the phenotypic variation with over 170 000 single nucleotide polymorphism loci (SNPs) generated by genotype by sequencing to identify genomic locations associated with calcification phenotype, and estimate heritability and architecture of the trait. We identified at least one of potentially 2–10 genomic regions responsible for 30% of the phenotypic variation in calcification rates that are potential targets of natural selection by climate change. Our simulations suggest a power of 13.7% with our study's average effective sample size of 118 individuals and rare alleles, but a power of >90% when effective sample size is 900.
Cloning of the first cDNA encoding a putative CCRFamide precursor: identification of the brain, eyestalk ganglia, and cardiac ganglion as sites of CCRFamide expression in the American lobster, Homarus americanus
Date: 2020-12-01
Creator: J. Joe Hull, Melissa A. Stefanek, Patsy S. Dickinson, Andrew E. Christie
Access: Open access
- Over the past decade, many new peptide families have been identified via in silico analyses of genomic and transcriptomic datasets. While various molecular and biochemical methods have confirmed the existence of some of these new groups, others remain in silico discoveries of computationally assembled sequences only. An example of the latter are the CCRFamides, named for the predicted presence of two pairs of disulfide bonded cysteine residues and an amidated arginine-phenylalanine carboxyl-terminus in family members, which have been identified from annelid, molluscan, and arthropod genomes/transcriptomes, but for which no precursor protein-encoding cDNAs have been cloned. Using routine transcriptome mining methods, we identified four Homarus americanus (American lobster) CCRFamide transcripts that share high sequence identity across the predicted open reading frames but more limited conservation in their 5′ terminal ends, suggesting the Homarus gene undergoes alternative splicing. RT-PCR profiling using primers designed to amplify an internal fragment common to all of the transcripts revealed expression in the supraoesophageal ganglion (brain), eyestalk ganglia, and cardiac ganglion. Variant specific profiling revealed a similar profile for variant 1, eyestalk ganglia specific expression of variant 2, and an absence of variant 3 expression in the cDNAs examined. The broad distribution of CCRFamide transcript expression in the H. americanus nervous system suggests a potential role as a locally released and/or circulating neuropeptide. This is the first report of the cloning of a CCRFamide-encoding cDNA from any species, and as such, provides the first non-in silico support for the existence of this invertebrate peptide family.
Bowdoin College Catalogue (1946-1947)
Date: 1947-01-01
Access: Open access
- Bowdoin College Bulletin no. 284
Bowdoin College Catalogue (1954-1955)
Date: 1955-01-01
Access: Open access
- Bowdoin College Bulletin no. 314
SIFamide peptides modulate cardiac activity differently in two species of Cancer crab
Date: 2019-10-01
Creator: Patsy S. Dickinson, Heidi M. Samuel, Elizabeth A. Stemmler, Andrew E. Christie
Access: Open access
- The SIFamides are a broadly conserved arthropod peptide family characterized by the C-terminal motif –SIFamide. In decapod crustaceans, two isoforms of SIFamide are known, GYRKPPFNGSIFamide (Gly1-SIFamide), which is nearly ubiquitously conserved in the order, and VYRKPPFNGSIFamide (Val1-SIFamide), known only from members of the astacidean genus Homarus. While much work has focused on the identification of SIFamide isoforms in decapods, there are few direct demonstrations of physiological function for members of the peptide family in this taxon. Here, we assessed the effects of Gly1- and Val1-SIFamide on the cardiac neuromuscular system of two closely related species of Cancer crab, Cancer borealis and Cancer irroratus. In each species, both peptides were cardioactive, with identical, dose-dependent effects elicited by both isoforms in a given species. Threshold concentrations for bioactivity are in the range typically associated with hormonal delivery, i.e., 10−9 to 10−8 M. Interestingly, and quite surprisingly, while the predicted effects of SIFamide on cardiac output are similar in both C. borealis and C. irroratus, frequency effects predominate in C. borealis, while amplitude effects predominate in C. irroratus. These findings suggest that, while SIFamide is likely to increase cardiac output in both crabs, the mechanism through which this is achieved is different in the two species. Immunohistochemical/mass spectrometric data suggest that SIFamide is delivered to the heart hormonally rather than locally, with the source of hormonal release being midgut epithelial endocrine cells in both Cancer species. If so, midgut-derived SIFamide may function as a regulator of cardiac output during the process of digestion.
Statement by Douglas Chapman collected by Erika Bjorum on August 9, 2023
Date: 2023-08-09
Creator: Douglas Chapman
Access: Open access
- This statement was given privately.
Bowdoin College Catalogue (1940-1941)
Date: 1941-01-01
Access: Open access
- Bowdoin College Bulletin no. 255
Chambers of Reflection: Rousseau, Tocqueville, and Self-Government in the Digital Age
Date: 2020-01-01
Creator: John Sweeney
Access: Open access
- Jean-Jacques Rousseau and Alexis de Tocqueville each warn that the dominant cultures of their days may hinder the project of self-government. Against the backdrop of advancing Enlightenment philosophy, Rousseau writes that as social visibility increases relative to intimate connection, the drive for recognition corrupts self-love. Following the American and French revolutions, Tocqueville explores the democratic erosion of social hierarchies. He writes that a rise in individualism may obscure “self-interest well-understood”—the perspective gained through collaboration with others, thoughtful reflection, and reverence for truths that lie beyond the dictates of cursory instincts. In this project, I apply these political theories to the Digital Age. I explain how the distinction between the physical world and the digital realm has actualized Rousseau’s depiction of double men, “always appearing to relate everything to others and never relating anything except to themselves alone.” In the era of social distancing, technological evolution threatens to induce regression in the sociability and reflective agency that promote our capacity for self-government. Accordingly, I argue that Rousseau’s theory of corrupted drive for recognition and Tocqueville’s theory of individualism inform a new danger to political freedom: digital tribalism.
Multiple transcriptome mining coupled with tissue specific molecular cloning and mass spectrometry provide insights into agatoxin-like peptide conservation in decapod crustaceans
Date: 2020-12-01
Creator: Andrew E. Christie, Cindy D. Rivera, Catherine M. Call, Patsy S. Dickinson, Elizabeth A., Stemmler, J. Joe Hull
Access: Open access
- Over the past decade, in silico genome and transcriptome mining has led to the identification of many new crustacean peptide families, including the agatoxin-like peptides (ALPs), a group named for their structural similarity to agatoxin, a spider venom component. Here, analysis of publicly accessible transcriptomes was used to expand our understanding of crustacean ALPs. Specifically, transcriptome mining was used to investigate the phylogenetic/structural conservation, tissue localization, and putative functions of ALPs in decapod species. Transcripts encoding putative ALP precursors were identified from one or more members of the Penaeoidea (penaeid shrimp), Sergestoidea (sergestid shrimps), Caridea (caridean shrimp), Astacidea (clawed lobsters and freshwater crayfish), Achelata (spiny/slipper lobsters), and Brachyura (true crabs), suggesting a broad, and perhaps ubiquitous, conservation of ALPs in decapods. Comparison of the predicted mature structures of decapod ALPs revealed high levels of amino acid conservation, including eight identically conserved cysteine residues that presumably allow for the formation of four identically positioned disulfide bridges. All decapod ALPs are predicted to have amidated carboxyl-terminals. Two isoforms of ALP appear to be present in most decapod species, one 44 amino acids long and the other 42 amino acids in length, both likely generated by alternative splicing of a single gene. In carideans, a gene or terminal exon duplication appears to have occurred, with alternative splicing producing four ALPs, two 44 and two 42 amino acid isoforms. The identification of ALP precursor-encoding transcripts in nervous system-specific transcriptomes (e.g., Homarus americanus brain, eyestalk ganglia, and cardiac ganglion assemblies, finding confirmed using RT-PCR) suggests that members of this peptide family may serve as locally-released and/or hormonally-delivered neuromodulators in decapods. Their detection in testis- and hepatopancreas-specific transcriptomes suggests that members of the ALP family may also play roles in male reproduction and innate immunity/detoxification.
In silico analyses suggest the cardiac ganglion of the lobster, Homarus americanus, contains a diverse array of putative innexin/innexin-like proteins, including both known and novel members of this protein family
Date: 2020-06-01
Creator: Andrew E. Christie, J. Joe Hull, Patsy S. Dickinson
Access: Open access
- Gap junctions are physical channels that connect adjacent cells, permitting the flow of small molecules/ions between the cytoplasms of the coupled units. Innexin/innexin-like proteins are responsible for the formation of invertebrate gap junctions. Within the nervous system, gap junctions often function as electrical synapses, providing a means for coordinating activity among electrically coupled neurons. While some gap junctions allow the bidirectional flow of small molecules/ions between coupled cells, others permit flow in one direction only or preferentially. The complement of innexins present in a gap junction determines its specific properties. Thus, understanding innexin diversity is key for understanding the full potential of electrical coupling in a species/system. The decapod crustacean cardiac ganglion (CG), which controls cardiac muscle contractions, is a simple pattern-generating neural network with extensive electrical coupling among its circuit elements. In the lobster, Homarus americanus, prior work suggested that the adult neuronal innexin complement consists of six innexins (Homam-Inx1-4 and Homam-Inx6-7). Here, using a H. americanus CG-specific transcriptome, we explored innexin complement in this portion of the lobster nervous system. With the exception of Homam-Inx4, all of the previously described innexins appear to be expressed in the H. americanus CG. In addition, transcripts encoding seven novel putative innexins (Homam-Inx8-14) were identified, four (Homam-Inx8-11) having multiple splice variants, e.g., six for Homam-Inx8. Collectively, these data indicate that the innexin complement of the lobster nervous system in general, and the CG specifically, is likely significantly greater than previously reported, suggesting the possibility of expanded gap junction diversity and function in H. americanus.
Genetic Analysis of Cellular Adhesion in Arabidopsis thaliana
Date: 2021-01-01
Creator: Andrew Close Bolender
Access: Open access
- Plant cell adhesion is mediated by the extracellular matrix (ECM) or cell wall and plays an important role in plant morphogenesis and development. The amount, modification, and cleavage of pectin in the cell wall are major contributors to the adhesive properties of the ECM. To gain a more complete picture of plant cell adhesion processes, Arabidopsis thaliana seedlings were previously mutagenized and screened for hypocotyl adhesion defects. Genomic sequencing of one plant exhibiting an adhesion defect, isolate 242, showed that two mutations, one in cellulose synthase (CesA1) and another in a sugar transporter, are candidates for the causative mutation. This thesis reports that CesA1 is necessary for proper plant cell adhesion, while the sugar transporter encoded at At4g32390 is not. Dark grown seedlings homozygous for mutations in CesA1 stain in ruthenium red, indicating atypical adhesion, while those homozygous for null mutations in At4g32390 do not. Previous study of another adhesion mutant revealed ELMO1, a Golgi protein necessary for plant cell adhesion, and four additional homologs ELMO2-5 in the A. thaliana genome. Two of these homologs, ELMO2 and ELMO3, fused to GFP, colocalized with mCherry-MEM1 markers in the Golgi, but not mCherry-NLM12 ER markers, indicating that ELMO2 and ELMO3 are also Golgi proteins.
A Foray into the Camp: Human and Ecological Liberation in Contemporary Queer Conversion Therapy Literature
Date: 2021-01-01
Creator: Mitchel Jurasek
Access: Open access
- Through the analysis of two contemporary conversion therapy novels in North America, this project explores the intersections of biopolitics (specifically camp theory), queer theory, ecocriticism, and YA literature. Emily Danforth’s The Miseducation of Cameron Post and Nick White’s How to Survive a Summer are paired with scholars such as Gilles Deleuze, Felix Guattari, Joshua Whitehead, Greta Gaard, Hannah Arendt, Giorgio Agamben, Claudio Minca, Catriona Sandilands, Luce Irigaray, and Michael Marder to create a complex and intricate understanding of how ecologies impact queer youths’ experience in conversion therapy camps. The effect of such an intersectional and ecological understanding of queer becomings creates a foundation for further discovery and offers examples for current and future people to find mutual liberation with the ecologies we exist in.
Bowdoin College Catalogue (1963-1964)
Date: 1964-01-01
Access: Open access
- Bowdoin College Bulletin no. 350
Solvent Effect on Excited State Proton Transfer Mechanism of 8-Amino-2-Naphthol
Date: 2021-01-01
Creator: Gabrielle Vandendries
Access: Open access
- Photoacids, compounds that undergo excited state proton transfer (ESPT), have been utilized in different solar energy and lithographic applications.1, 2 The addition of functional groups and solvent can both change the ESPT mechanism of photoacids. In this study, the effect of solvent on the ESPT mechanism was explored using a model diprotic photoacid, 8-amino-2-naphthol (8N2OH). The photochemistry of 8N2OH in water and common nonaqueous solvents, acetonitrile, tetrahydrofuran (THF), and methanol, were studied using UV/Vis absorption, steady-state emission, and time-correlated single photon counting (TCPSC) emission spectroscopy. The results were analyzed using the Kamlet-Taft parameters. It was found that the ESPT mechanism of the cation in water is different from the mechanism in acetonitrile and THF. In water the excited cation forms the zwitterion, i.e. the OH site undergoes ESPT, while in acetonitrile and THF, the excited cation forms the neutral species, i.e. the NH3+ site undergoes ESPT. No ESPT was observed for 8N2OH in methanol. The effect of solvent mixtures on photoacidity was also investigated using acetonitrile and water mixtures. The solvent effects were more subtle; the time-resolved emission measurements showed the greatest stabilization of the excited neutral 8N2OH species at 20/80% acetonitrile-water mixtures. Finally, the ability to extend the solvent studies to ionic liquids, 1-ethyl-3-methylimidazolium (Im) trifluromethanesulfonate (OTF), was demonstrated. The combined studies reveal that solvent plays a large role in determining the ESPT mechanism and stabilization of 8N2OH.
Bowdoin College Catalogue (1962-1963)
Date: 1963-01-01
Access: Open access
- Bowdoin College Bulletin no. 346